DRSC/TRiP Functional Genomics Resources

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Protein Alignment mmd and LOC100360238

DIOPT Version :9

Sequence 1:NP_001285311.1 Gene:mmd / 32561 FlyBaseID:FBgn0259110 Length:1484 Species:Drosophila melanogaster
Sequence 2:XP_003751238.2 Gene:LOC100360238 / 100360238 RGDID:2322512 Length:817 Species:Rattus norvegicus


Alignment Length:906 Identity:246/906 - (27%)
Similarity:397/906 - (43%) Gaps:122/906 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 VERLLKEYRQNQELVRRIGGHYYQIIYPVQ-LRHHEKMGISTREVSLPK--PGQRPRPHDDSGFN 104
            :|||..|..|.|..:|.:......||:.:. |.....:..|:.|..:|:  |||   ..||.|  
  Rat     1 MERLKLEQIQTQLCIRLVAMLLLAIIFLLSTLCDLGSVYDSSYETVIPERLPGQ---GSDDPG-- 60

  Fly   105 RGRTKKHFHRTSLLIKAFNHKFRLDLELNSQLLSPNIQQKHYHVGGYLVDGNRHDI--EHCYYHG 167
                    .:.|.::.....|..|.||:.......|.....||.|   :.|....:  :.|:|.|
  Rat    61 --------GKVSYVLLMQGQKQLLHLEVKGHYSERNFPVYSYHHG---ILGQEVPLLSQACHYEG 114

  Fly   168 TVKDYPGASAAFHTCNGVSGVIHIGNET-FVIHPFYGGDLSKHPHVIFEARTKANKG--CANSGN 229
            .::..||:..:...|:|:.||: |..|| :.|.|....  :...|:::   |.|::.  ..|...
  Rat   115 HIEGVPGSFVSVSICSGLRGVL-IKEETAYGIEPLLFS--TNFEHILY---TMAHQPVVLCNVTP 173

  Fly   230 LDSWRLSRRTKHLSAGVAGVVEEILQAGVGRNKRDVREATKYIETAIIVDKAMFDK--RNGSTRA 292
            .||...|.:.:..|.     .:|:|...      |:....||:|..::|:...|..  .:.:|..
  Rat   174 TDSLGDSSQRQGSSK-----TDELLALS------DLWSHAKYVEMFVVVNHQRFQMWGSDVNTTV 227

  Fly   293 EVIHDAIQVANIADLYFRTLNTRVSVVYIETWGKNQAVIDGSKDISKAISNFNDYTSRNLF-QIE 356
            :.:.|.|.:||   .:.|.:||.|.:|.:|.|.:... |:...|:...:.|||.:....|. ::.
  Rat   228 QAVVDIIALAN---SFTRGINTEVVLVGLEIWTEGDP-IEVPVDLQATLRNFNLWRQEKLMGRVR 288

  Fly   357 RDTTQLLTGETFAGGEAGMAVPETVCTPRAVGISVDVNVYEPH---LLAGTMAHMIGHNIGMGHD 418
            .|...|:.|.. .|...|.|..:..|:.   |.:..|..:...   |.|..|||.:|||:|:.||
  Rat   289 HDVAHLIVGHR-PGANEGQAFLDGACSG---GFAAAVEAFHHEDVLLFAALMAHELGHNLGIRHD 349

  Fly   419 DGREECFCRDWHGCIMAQSIVGQENVQPYKFSECSKKDYIDALRTGHGLCLLNKP-NEIELRR-- 480
              |..|.|...|.|:|.:.|.....     ||.||...::..|....|.|||::| ::...||  
  Rat   350 --RPGCTCGPKHLCLMHEMISKTSG-----FSNCSSDHFLRFLHDHRGACLLDRPWHQSHKRRDA 407

  Fly   481 NCGNKVVEEDEECDCGTFEECALDQCCDGITCKLKSEAQCASGACCDQCRLRPKDYICRDSNNEC 545
            :|||.||||.||||||  ..|..:||||. .||||..|||::..||..|:.:.|..:||.:...|
  Rat   408 HCGNGVVEESEECDCG--NACDKNQCCDE-KCKLKEGAQCSNELCCLHCKFKNKGAVCRPAQGLC 469

  Fly   546 DLPEYCDGEIGQCPSDVFKKNGSPCGLSKTGISGYCFQGYCPTLSLQCEAIWGYGGSAADRQCYE 610
            ||.|||:|....||:|...::||.|..|.     :||.|.|...|.||..|:|:|..:|..:||.
  Rat   470 DLEEYCNGTSAVCPNDRIAQDGSICQESY-----FCFGGQCRDPSSQCSHIFGFGSRSAPDECYT 529

  Fly   611 QFNSKGSINGHCG--RDANEHYIKCEPENVQCGTLQCKD-GERQPVNDGIDQLYSRTIISIKGQE 672
            ..|.:|:..|:||  .|:...|:||..:|:.||.|.|.: |...|:.|      ...:|.|...|
  Rat   530 SLNKRGNRFGNCGPSSDSPGTYVKCSDQNILCGKLICTEVGYLPPIKD------KHMLIQIPQVE 588

  Fly   673 FECKATSGQVGSNSYPEHGLVKDGTPCGDNLICLNQTC--VSLFPHVDQTKCPANSQGLECSEHG 735
            ..|.:......::::.| |.|...|.||...:|.|..|  .::.|:    .|.|.|   .|:|||
  Rat   589 DWCWSMDAFDKTDAFDE-GYVWTNTSCGTGKVCENSICKDYTIVPN----PCKAES---ICNEHG 645

  Fly   736 VCTNTNRCFCDMGWGGNDC------SSVVLLTTALPTEALPTPENTIKMEKKETPYGTSDQNRIS 794
            ||.:...|.|..|:...||      .||....|.:|.:...|.:|..:         :|.::.|.
  Rat   646 VCNDLGNCHCLFGFAPPDCKEEGTGGSVDSGPTVIPPDDFNTGQNATQ---------SSREDLIL 701

  Fly   795 TLTMVIILTVIVKCVFISFATLAVCYRRKTTTLKYDPPYSKKPIAKSYGGAATAPNHHSVEEVSL 859
            .|.::::..::|..:.:....:...|.:.....:.:|...:|...:...|.| .|....::|   
  Rat   702 NLKLIVLAVILVLMILLIITCIITAYSKSEPASEGEPSEIEKVPEEEEEGEA-LPEEEEIKE--- 762

  Fly   860 DGSSKLVYANQTGFRDKGIHGRRYTTCGEDDQSHAEKGIL-KKHGYGLVHGEQLKDKWGDD 919
              .::.....:.|   :|..|..     |::.:..|:|.: ::.|.|.:..|..:::.|::
  Rat   763 --EAEEAIGEEEG---EGAIGEE-----EEEGAIGEEGAIGEEEGEGAIEEEGAEEEEGEE 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mmdNP_001285311.1 Pep_M12B_propep 106..213 CDD:279848 25/109 (23%)
Reprolysin 270..473 CDD:279729 59/208 (28%)
ZnMc_adamalysin_II_like 270..471 CDD:239797 58/206 (28%)
Disintegrin 488..562 CDD:278623 35/73 (48%)
ACR 566..713 CDD:214743 47/151 (31%)
LOC100360238XP_003751238.2 Pep_M12B_propep 44..159 CDD:396235 33/133 (25%)
Reprolysin 203..397 CDD:396140 59/208 (28%)
DISIN 415..485 CDD:214490 35/72 (49%)
ACR 489..627 CDD:214743 47/149 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 273 1.000 Inparanoid score I2908
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D162519at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11905
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X50
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.070

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