Protein Alignment Lcch3 and glra4a

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: XP_005169655.1
• Gene: glra4a / 83413
• ZFINID: ZDB-GENE-010410-3
• Length: 457
• Species: Danio rerio
• Alignment Length: 497
• Identity: 192/497 - (38%)
• Similarity: 271/497 - (54%)
• Gaps: 82/497 - (16%)

  Fly    14 FFFLLGAQLQLIRCIRKDVLAGRLENVTQTISNIL-------QGYDIRLRPNFGGEPLHVGMDLT 71
            |||..|..::|..|..:...:.|......:.|:.|       .|||.|:||||.|.|::|..::.
Zfish    14 FFFFQGGFIRLGSCKEEIKSSSRPAQKPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIF 78

  Fly    72 IASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDT 136
            |.||.:|:|..|||.:.::|.|.|.|.|||::   :|.|..        |.|.....:.||.||.
Zfish    79 INSFGSITETTMDYRLNVFLRQQWNDPRLAYS---EYPDAS--------LDLDPSMLDSIWKPDL 132

  Fly   137 FFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTV 201
            ||||:|.:..|:||..|||:|:..:|.|.|.:|.|..|:|.|||..:|:|.|.||:::||:|||:
Zfish   133 FFANEKGANFHEVTTDNKLLRIFQNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTM 197

  Fly   202 SDVVMYW-KPTPVRGVEDAELPQFTI-----IGYETNDRKERLATGVYQRLSLSFKLQRNIGYFV 260
            :|::..| ...||:..:|..||||.:     :||.|    :...||.:..:.:.|.|:|.:||::
Zfish   198 NDLIFEWLSDNPVQVADDLTLPQFVLKEEKDLGYCT----KHYNTGKFTCIEVKFHLERQMGYYL 258

  Fly   261 FQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVM 325
            .|.|:||:|||:|||||||||.:|..|||.|||||||||||.|:|.|:|||::||||||||::.:
Zfish   259 IQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAV 323

  Fly   326 CFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPI 390
            |.:|||||||||||||:.   .|..|:..:::        |.:|.:.       ||.:.||.|
Zfish   324 CLLFVFAALLEYAAVNFV---SRQHKEFIRLR--------KKQRRQR-------IEEELVRES-- 368

  Fly   391 PSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRR--RAQRGIS--TRPRMLHALK 451
                ||.|                       .|.||.||....:  .|..|.|  ..|..:..|.
Zfish   369 ----RGFY-----------------------FRGYGLGHCLQTKDGTAVEGSSVFAPPPPVQVLY 406

  Fly   452 RGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
            .|.:..|..:.:.|.   ||..||.:||:|||.||:.||:.|
Zfish   407 DGEAVRKRFVDRAKR---IDTISRAVFPLSFLIFNVFYWITY 445

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	190/494 (38%)
		Neur_chan_LBD	47..256	CDD:280998	84/221 (38%)
		Neur_chan_memb	263..490	CDD:280999	94/230 (41%)
glra4a	XP_005169655.1	LIC	27..445	CDD:273305	186/482 (39%)
		Neur_chan_LBD	48..254	CDD:280998	84/220 (38%)
		Neur_chan_memb	261..442	CDD:280999	94/230 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.810