DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lcch3 and gabrg2

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_031754595.1 Gene:gabrg2 / 779514 XenbaseID:XB-GENE-5949005 Length:505 Species:Xenopus tropicalis


Alignment Length:464 Identity:162/464 - (34%)
Similarity:240/464 - (51%) Gaps:63/464 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 NVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFN 103
            :||..::.:|:|||.:|||:.|.:|..:..|:.:.|...::.:||:|||.::..|.|.|.||.||
 Frog    95 DVTSILNGLLKGYDNKLRPDIGVKPTVIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 159

  Fly   104 IFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGM 168
                        ....||.|:.:...|||:|||||.|.|.:..|.:|..|:::|:..||.|.|.:
 Frog   160 ------------STIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTL 212

  Fly   169 RFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVR--GVEDAELPQFTIIGYET 231
            |.|....|.:.||.:|:|..:|.:|..||||...:::..||.:.|.  .|....|.||:.:|...
 Frog   213 RLTIDAECQLQLHNFPMDEHSCPLEFSSYGYPKEEIIYQWKRSSVEVGDVRSWRLYQFSFVGLRN 277

  Fly   232 NDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTV 296
            ...:.:..:|.|..:::.|.|.|.:|||..|||:|..|||:|||||||||.:|..||.:||||||
 Frog   278 TTEEVKTTSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTV 342

  Fly   297 LTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCP 361
            |||||:||..|.|||::|||.|:|:::.:||:||||||:||..::| :...|...|.|:.|:..|
 Frog   343 LTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHY-FVSNRKPSKDKEKKKKNP 406

  Fly   362 GKIGKSERSETCSTTEDIIELQDVR-MSPIPSLRRGTYNATLD-SIGTETMNLGK----FPPSFR 420
            .....|.::.|.          |:| .|....:...|:....| ..|.|.:: ||    |...|.
 Frog   407 LLWMFSFKAPTI----------DIRPRSATIQMNNATHLQERDEEYGYECLD-GKDCASFFCCFE 460

  Fly   421 ITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAF 485
            ..|.....|.::..|..:                               ||.|||:.||.:|..|
 Frog   461 DCRTGAWRHGRIHIRVAK-------------------------------IDSYSRIFFPTAFCLF 494

  Fly   486 NLGYWLFYI 494
            ||.||:.|:
 Frog   495 NLVYWVSYL 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 161/461 (35%)
Neur_chan_LBD 47..256 CDD:280998 70/210 (33%)
Neur_chan_memb 263..490 CDD:280999 83/232 (36%)
gabrg2XP_031754595.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.