Protein Alignment Lcch3 and Gabrq

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: XP_006229578.1
• Gene: Gabrq / 65187
• RGDID: 68331
• Length: 640
• Species: Rattus norvegicus
• Alignment Length: 602
• Identity: 177/602 - (29%)
• Similarity: 292/602 - (48%)
• Gaps: 168/602 - (27%)

  Fly    40 VTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNI 104
            |.:.:..:|..||:||||||||.|:.|.:.:.::|.:.|||:||||||||:|:|.|:|.|||:
  Rat    59 VQKILDRVLSTYDVRLRPNFGGAPVPVSISIYVSSIEQISEINMDYTITMFLHQTWKDTRLAY-- 121

  Fly   105 FGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMR 169
               |..:.|       |||.....||:||||.:|.|.|::|:||||..|::.:|..||.|.||:|
  Rat   122 ---YETNLN-------LTLDYRMHEKLWVPDCYFVNSKDAFVHDVTAENRVFQLHPDGTVQYGIR 176

  Fly   170 FTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWK-PTPVRGVEDAELPQFTIIGYETND 233
            .|||.||.:||..:|:|.|:|.:|:|||||||.|:|:.|: ...:...::..:||:|.:|.....
  Rat   177 LTTTAACSLDLQKFPMDKQSCKLEVESYGYTVEDIVLSWEDDNAIHITDELHIPQYTYLGRTITS 241

  Fly   234 RKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLT 298
            ::....||.|.||.:.|::||.:..::.|.|.|::|..:|||:|||:|:.:::|||.:|:|::|.
  Rat   242 KEVYFYTGSYMRLIVKFQVQREVRSYLVQVYWPTVLTTILSWISFWMNYGSSAARVTIGLTSILV 306

  Fly   299 MTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGK 363
            :|||.:.:|..||.||.:||||||:::|..|||.:||||..:||.::.:..::..::.::  |.:
  Rat   307 LTTIDSHMRDKLPHISCIKAIDIYILVCLFFVFLSLLEYVYINYLFFSQAPRRNHRRCRK--PRR 369

  Fly   364 IGKSERSE---TCSTTEDIIELQD---VRMSPIPSLRRGTYNATLDSIG-------------TET 409
            :....|.:   ..:..:.:|.::|   .|..|:|......:.|:.:|:|             :|:
  Rat   370 VVARYRYQEVVVANVQDGLINVEDRVEDRAGPLPDSPMQAHLASQESLGSLMFTSEEAQLATSES 434

  Fly   410 M----------------NLGKFP-------PSFRI------------------------------ 421
            :                :||..|       |.:.|
  Rat   435 LSLLSSASSQVQLATGESLGDLPSTSEQTLPDYTIHFHGFLTNDSILPIKIRSHSDALGDEDSEE 499

  Fly   422 ----TRNYGTGHS-------QLRRRAQRGISTRPRMLHALKRGASAIKAT--------------- 460
                ..:||.|.|       |:.:|..:..|.....:.:|:...| ||::
  Rat   500 SLSSEESYGHGGSPTGRLKLQISQRCVQEASWDIDKIESLQDDIS-IKSSWLGLDEQRKGDADSI 563

  Fly   461 ------------------------------------------------IPKIKDVNIIDKYSRMI 477
                                                            :||      :|::||.:
  Rat   564 WSLTDEELMACDQEKDSSSSSESEESCSPSPGCSFNEGFSFQLFNPNRVPK------VDRWSRFL 622

  Fly   478 FPISFLAFNLGYWLFYI 494
            ||:||..||:.|||::|
  Rat   623 FPLSFGLFNVVYWLYHI 639

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	176/599 (29%)
		Neur_chan_LBD	47..256	CDD:280998	93/209 (44%)
		Neur_chan_memb	263..490	CDD:280999	78/372 (21%)
Gabrq	XP_006229578.1	Neur_chan_LBD	60..264	CDD:280998	93/215 (43%)
		Neur_chan_memb	271..>373	CDD:280999	41/103 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D226476at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.020