| Sequence 1: | NP_996469.1 | Gene: | Lcch3 / 32554 | FlyBaseID: | FBgn0010240 | Length: | 496 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_065234.1 | Gene: | Gabrq / 57249 | MGIID: | 1888498 | Length: | 638 | Species: | Mus musculus |
| Alignment Length: | 599 | Identity: | 175/599 - (29%) |
|---|---|---|---|
| Similarity: | 288/599 - (48%) | Gaps: | 164/599 - (27%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 40 VTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNI 104
Fly 105 FGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMR 169
Fly 170 FTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVEDA-ELPQFTIIGYETND 233
Fly 234 RKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLT 298
Fly 299 MTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGK 363
Fly 364 IGKSERSE---TCSTTEDIIELQD---VRMSPIPSLRRGTYNATLDSIG-------------TET 409
Fly 410 M----------------NLGKFPPSFRIT------------------------------------ 422
Fly 423 -------RNYGTGHS-----QLRRRA--------------QRGISTRPRML---HALKRGASAIK 458
Fly 459 A-------------------------------------------TIPKIKDVNIIDKYSRMIFPI 480
Fly 481 SFLAFNLGYWLFYI 494 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Lcch3 | NP_996469.1 | LIC | 15..493 | CDD:273305 | 175/596 (29%) |
| Neur_chan_LBD | 47..256 | CDD:280998 | 94/209 (45%) | ||
| Neur_chan_memb | 263..490 | CDD:280999 | 76/369 (21%) | ||
| Gabrq | NP_065234.1 | LGIC_ECD_GABAAR_theta | 82..263 | CDD:349804 | 82/192 (43%) |
| Cys-loop | 183..197 | CDD:349804 | 6/13 (46%) | ||
| LGIC_TM_GABAAR_theta | 266..365 | CDD:349858 | 41/98 (42%) | ||
| TM1 helix | 266..289 | CDD:349858 | 10/22 (45%) | ||
| TM2 helix | 293..317 | CDD:349858 | 10/23 (43%) | ||
| TM3 helix | 325..351 | CDD:349858 | 15/25 (60%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 491..515 | 2/23 (9%) | |||
| LGIC_TM | <604..636 | CDD:365787 | 14/37 (38%) | ||
| TM4 helix | 612..633 | CDD:349850 | 10/26 (38%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_KOG3644 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D226476at33208 | |
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 1 | 1.100 | - | - | O | PTHR18945 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 1 | 0.960 | - | - | ||
| 6 | 5.880 | |||||