Protein Alignment Lcch3 and gabrd

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: XP_700099.5
• Gene: gabrd / 571422
• ZFINID: ZDB-GENE-081105-170
• Length: 459
• Species: Danio rerio
• Alignment Length: 465
• Identity: 177/465 - (38%)
• Similarity: 257/465 - (55%)
• Gaps: 63/465 - (13%)

  Fly    44 ISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQY 108
            :.::::||....||..||.|::|.|.:.:||.|.|||.||:||:|::|.|.|||:||::|
Zfish    45 LDDLMKGYARNFRPGIGGPPVNVAMAIEVASIDHISEANMEYTMTVFLRQSWRDDRLSYN----- 104

  Fly   109 FDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTT 173
                   ..:..|.|...|.:|:|:||||..|.|:::.||||..|||:||..||.:.|..|.|:|
Zfish   105 -------HTNKTLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSSRITST 162

  Fly   174 LACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTP--VRGVEDAELPQFTIIGYE-TNDRK 235
            :||.|||..||:|.|.|.:::|||||:..|:|.:|..:.  :.|::..||.||||..|. ..:..
Zfish   163 VACDMDLTKYPMDEQECMLDLESYGYSSEDIVYHWSESQKLIHGLDKLELSQFTITDYRFVTEMM 227

  Fly   236 ERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMT 300
            ...:.|.:.||||.|:|:||.|.::.|:|:||||:|.:|||||||:..|..|||:||||||||||
Zfish   228 NFKSAGRFPRLSLRFQLRRNRGVYIIQSYMPSILLVAMSWVSFWISQSAVPARVSLGITTVLTMT 292

  Fly   301 TISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTY-WGKRAKKKIKKVKECCPGKI 364
            |:....||||||.|.:||:|:|..:|:|||||||:|||..:|.. :.|:.|.|:|
Zfish   293 TLMVSARSSLPRASAIKALDVYFWICYVFVFAALIEYAFAHYNADYSKKEKAKVK---------- 347

  Fly   365 GKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTG- 428
                   |....|.::             :.|.....|.|:....||.|.. .|.|.:|::...
Zfish   348 -------TNKNAESMV-------------KNGKQAMVLFSLSVAGMNQGLL-ISNRQSRSHRASD 391

  Fly   429 --------HSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAF 485
                    |.:...|:    :|..|   |.|..:...|....|..|.:.||.|:|.:||.:|...
Zfish   392 AAAAAADPHEETETRS----ATSRR---AQKESSEEKKCCKCKPIDADTIDIYARAVFPFTFAVV 449

  Fly   486 NLGYWLFYIL 495
            |:.||:.|.:
Zfish   450 NVIYWVAYTM 459

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	176/461 (38%)
		Neur_chan_LBD	47..256	CDD:280998	88/211 (42%)
		Neur_chan_memb	263..490	CDD:280999	83/236 (35%)
gabrd	XP_700099.5	LIC	45..457	CDD:273305	176/461 (38%)
		Neur_chan_LBD	45..247	CDD:280998	87/213 (41%)
		Neur_chan_memb	256..454	CDD:280999	83/235 (35%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D226476at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.920