Protein Alignment Lcch3 and gabrr3a

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: NP_001122232.1
• Gene: gabrr3a / 570876
• ZFINID: ZDB-GENE-080722-20
• Length: 472
• Species: Danio rerio
• Alignment Length: 460
• Identity: 184/460 - (40%)
• Similarity: 257/460 - (55%)
• Gaps: 75/460 - (16%)

  Fly    48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
            ::.:|..:||.|||..:.||:|:.:.|.|.|||||||:|:|:||..||:|:|||       |...
Zfish    73 IEDHDFAMRPGFGGSAIPVGIDVQVESIDGISEVNMDFTMTLYLRHYWQDDRLA-------FPSS 130

  Fly   113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACM 177
            |:..    .|......:||||||.||.:.|.||:||.|..|.::|:..||.:.|.:|.|.|..|.
Zfish   131 NNKS----RTFDARLVKKIWVPDVFFVHSKRSFIHDTTMENIMLRVFPDGNILYSVRITVTALCS 191

  Fly   178 MDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRG-----VEDAELPQFTIIGYETNDRKER 237
            ||...:|||:|||::|:|||.|..:|:::|||    .|     .::..|.||.|   |.......
Zfish   192 MDFSRFPLDTQNCSLELESYAYNENDLMLYWK----NGNDSLRTDEIALSQFFI---EEFHPSYG 249

  Fly   238 LA----TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLT 298
            ||    ||.|.||.::|.|:|:|.:|:.|||.|::|:||||||||||:..|..|||:||||||||
Zfish   250 LAFYSSTGWYNRLYINFILRRHIFFFMLQTYFPTMLMVMLSWVSFWIDRRAVPARVSLGITTVLT 314

  Fly   299 MTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGK 363
            |:||.|||.:|:|::|||||:||||...|:|||.:::||||||| :......||::|      ||
Zfish   315 MSTIITGVSASMPQVSYVKAVDIYLWASFLFVFLSVIEYAAVNY-FTTVEEMKKLQK------GK 372

  Fly   364 IGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSI-----GTETMNLGKFPPSFRITR 423
            :..| ...|.:...|.....|:..||.|.|  .|..:|..:|     .||       ||....||
Zfish   373 LPAS-YDATQAMAYDGCFHDDIDASPFPEL--PTTPSTTRTIPARASSTE-------PPPTEGTR 427

  Fly   424 NYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLG 488
                    |.|:...|.:.|..|.::.                  :||.|||::||:::|.||:.
Zfish   428 --------LWRKRSVGKNIRFIMSNSY------------------MIDSYSRILFPLAYLLFNII 466

  Fly   489 YWLFY 493
            ||..|
Zfish   467 YWCIY 471

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	183/458 (40%)
		Neur_chan_LBD	47..256	CDD:280998	87/216 (40%)
		Neur_chan_memb	263..490	CDD:280999	91/231 (39%)
gabrr3a	NP_001122232.1	LIC	67..471	CDD:273305	183/458 (40%)
		LGIC_ECD	88..272	CDD:355788	81/201 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D226476at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.920