DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and gabrr2b

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_068071705.2 Gene:gabrr2b / 569032 ZFINID:ZDB-GENE-041014-174 Length:466 Species:Danio rerio


Alignment Length:478 Identity:187/478 - (39%)
Similarity:256/478 - (53%) Gaps:103/478 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
            ::.:|..:||.|.|..:.||:|:.:.|.|:||||:||:|:|:||..||:||||:|.      ...
Zfish    61 VEDHDFTMRPAFAGPAVPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFP------SKH 119

  Fly   113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRF--TTTLA 175
            |..     :|..|...:||||||.||.:.|.||:||.|..|.::|:..||.|.|.:.|  |.|.|
Zfish   120 NKS-----MTFDGRLVKKIWVPDVFFVHSKRSFIHDTTTENIMIRVYPDGHVLYSLSFRVTVTSA 179

  Fly   176 CMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVED------AELPQFTIIGYETNDR 234
            |.||...:|||:|.||:|:|||.||..|:::|||    .|.|.      ..|.||.|..:.|.  
Zfish   180 CNMDFSRFPLDTQTCTLELESYAYTDEDLMLYWK----SGDESLSTDDKISLSQFLIQKFHTT-- 238

  Fly   235 KERLA----TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITT 295
             .|||    ||.|.||.::|.|:|:|.:|:.|||.|:.|:||||||||||:..|..|||:|||||
Zfish   239 -SRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITT 302

  Fly   296 VLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY---TYWGKRAKKKIKKVK 357
            ||||:||.|||.:|:||:||:||:||||.:.|||||.::||||||||   .:.|...|.:.|.:.
Zfish   303 VLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVHDGTDRKLRQKTLP 367

  Fly   358 ECC----------------PGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIG 406
            ..|                |...|.:..::|..::|:..|.||    |:         |...|||
Zfish   368 GTCDISSMRTMMLNEAYGRPESNGLAGYTQTTVSSEEPAEKQD----PM---------AVCLSIG 419

  Fly   407 TETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIID 471
            .|...                    .::|..||:..                     |::.:.||
Zfish   420 PEVKG--------------------AKKRTLRGLRI---------------------IQNTHAID 443

  Fly   472 KYSRMIFPISFLAFNLGYWLFYI 494
            .|||||||.:|:.|||.||..|:
Zfish   444 AYSRMIFPGAFIFFNLIYWSVYL 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 186/475 (39%)
gabrr2bXP_068071705.2 None

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