DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and gabrr1

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001020724.1 Gene:gabrr1 / 568984 ZFINID:ZDB-GENE-040724-212 Length:466 Species:Danio rerio


Alignment Length:468 Identity:184/468 - (39%)
Similarity:259/468 - (55%) Gaps:91/468 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
            |..:|..:||.|||..:.||:|:.:.|.|.||||:||:|:|:||..||:|.||:|          
Zfish    66 LDDHDFTMRPGFGGPAIPVGVDVQLESLDTISEVDMDFTMTLYLRHYWKDARLSF---------- 120

  Fly   113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACM 177
             ....:..:|..|...:||||||.||.:.|.||:||.|..|.::|:..||.|.|.:|.|.|..|.
Zfish   121 -PSNTNQSMTFDGRLVKKIWVPDIFFVHSKRSFIHDTTTENVMLRVHPDGKVLYSLRVTVTSMCN 184

  Fly   178 MDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVEDAE------LPQFTIIGYETNDRKE 236
            |||.::|||:|.|::|||||.||..|:::|||    ||.:..:      |.||.|..:.|.   .
Zfish   185 MDLSHFPLDTQTCSLEIESYAYTDDDLMLYWK----RGNKSLQTDDKISLSQFLIQEFHTT---T 242

  Fly   237 RLA----TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVL 297
            :||    ||.|.||.::|.|:|:|.:|:.|||.|:.|:||||||||||:..|..|||.|||||||
Zfish   243 KLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVL 307

  Fly   298 TMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPG 362
            ||:||.|||.:|:||:||:||:||||.:.|||||.:::|||||||          :..::|    
Zfish   308 TMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVIEYAAVNY----------LSTLQE---- 358

  Fly   363 KIGKSERSE-------TCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFR 420
               :.|||:       ||..|.           |...:...:| :.:|.:               
Zfish   359 ---RKERSQNSRQLPCTCGMTH-----------PGQMMMSSSY-SEMDMM--------------- 393

  Fly   421 ITRNYGTGHSQLRRRAQRGISTRPRMLHAL---KRGAS--AIKATIPKIKDVNIIDKYSRMIFPI 480
            .|.|||.  |:|....|...     ::|.:   ::||.  |:..:.....|.:.||||||:|||.
Zfish   394 TTGNYGM--SELSDTKQEQF-----LVHLVMDNEQGAQRPAVTTSSTLNIDTHAIDKYSRVIFPG 451

  Fly   481 SFLAFNLGYWLFY 493
            ::..||:.||..|
Zfish   452 AYTLFNIIYWSIY 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 183/466 (39%)
Neur_chan_LBD 47..256 CDD:280998 90/217 (41%)
Neur_chan_memb 263..490 CDD:280999 88/238 (37%)
gabrr1NP_001020724.1 LIC 44..464 CDD:273305 183/466 (39%)
LGIC_ECD 81..266 CDD:355788 83/202 (41%)
Cys-loop 183..197 CDD:349787 8/13 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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