DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and gabrp

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_005173350.1 Gene:gabrp / 566633 ZFINID:ZDB-GENE-081028-62 Length:464 Species:Danio rerio


Alignment Length:460 Identity:171/460 - (37%)
Similarity:265/460 - (57%) Gaps:60/460 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 TISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQ 107
            ||..:::||:..|||||...|:.:||.|.|||.|||||:|||||.|::|.|.|||.||.|     
Zfish    57 TIQKLMKGYNRYLRPNFNEGPVEIGMSLDIASIDAISEINMDYTATIFLRQRWRDSRLIF----- 116

  Fly   108 YFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTT 172
                   .| ::.|:|.|.....:|:||||..:.|.|||||||..|:|:|:..:|.|.|.:|.|.
Zfish   117 -------PG-NESLSLDGRLVSLLWIPDTFIPDSKRSFLHDVTVENRLIRIFSNGTVLYALRITA 173

  Fly   173 TLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWK--PTPVRGVEDAELPQFTIIGYETNDRK 235
            |:||.|||..||:|.|.||:::||:||.:.|||.||.  ...|:|::...|.|:::..|.|:..|
Zfish   174 TIACNMDLTKYPMDRQECTLQLESWGYNLEDVVFYWTRGNDSVKGLDTLRLAQYSVESYYTSVTK 238

  Fly   236 ERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMT 300
            ....||:|.:|.|.|.|:||:.:|:.:||:||.|:|:||||||||:..:..||..:|:|||||||
Zfish   239 AVYETGLYPKLILHFALRRNVLFFILETYVPSTLLVVLSWVSFWISQSSVPARTCIGVTTVLTMT 303

  Fly   301 TISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKR----AKKKIKKVKECC 360
            |:..|.|:|||..: ::||||:||.:||.|:|.||||||..::.....:    .::::.|     
Zfish   304 TLMMGARTSLPNANCFIKAIDVYLGICFTFIFGALLEYACAHFCTMQHQTIIDVQRELLK----- 363

  Fly   361 PGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNY 425
                   |..|:..||..:..:...:|....|.::.....|:.....|.:..         |:..
Zfish   364 -------EFEESNGTTHLVSSMSPRKMKTEDSTKQEKPEQTVTCEENEAIEQ---------TKEK 412

  Fly   426 GTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYW 490
            |.|.:.:::.::|.                   |::..:::.:.||:::|::||::||..|:.||
Zfish   413 GCGLTTVKQMSRRA-------------------ASMMSVENPHNIDRHARILFPMAFLLINIFYW 458

  Fly   491 LFYIL 495
            |:|:|
Zfish   459 LYYLL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 169/456 (37%)
Neur_chan_LBD 47..256 CDD:280998 94/210 (45%)
Neur_chan_memb 263..490 CDD:280999 68/231 (29%)
gabrpXP_005173350.1 Neur_chan_LBD 21..461 CDD:332142 169/456 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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