DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and gabrp

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_005173350.2 Gene:gabrp / 566633 ZFINID:ZDB-GENE-081028-62 Length:464 Species:Danio rerio


Alignment Length:460 Identity:171/460 - (37%)
Similarity:265/460 - (57%) Gaps:60/460 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 TISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQ 107
            ||..:::||:..|||||...|:.:||.|.|||.|||||:|||||.|::|.|.|||.||.|     
Zfish    57 TIQKLMKGYNRYLRPNFNEGPVEIGMSLDIASIDAISEINMDYTATIFLRQRWRDSRLIF----- 116

  Fly   108 YFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTT 172
                   .| ::.|:|.|.....:|:||||..:.|.|||||||..|:|:|:..:|.|.|.:|.|.
Zfish   117 -------PG-NESLSLDGRLVSLLWIPDTFIPDSKRSFLHDVTVENRLIRIFSNGTVLYALRITA 173

  Fly   173 TLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWK--PTPVRGVEDAELPQFTIIGYETNDRK 235
            |:||.|||..||:|.|.||:::||:||.:.|||.||.  ...|:|::...|.|:::..|.|:..|
Zfish   174 TIACNMDLTKYPMDRQECTLQLESWGYNLEDVVFYWTRGNDSVKGLDTLRLAQYSVESYYTSVTK 238

  Fly   236 ERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMT 300
            ....||:|.:|.|.|.|:||:.:|:.:||:||.|:|:||||||||:..:..||..:|:|||||||
Zfish   239 AVYETGLYPKLILHFALRRNVLFFILETYVPSTLLVVLSWVSFWISQSSVPARTCIGVTTVLTMT 303

  Fly   301 TISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKR----AKKKIKKVKECC 360
            |:..|.|:|||..: ::||||:||.:||.|:|.||||||..::.....:    .::::.|     
Zfish   304 TLMMGARTSLPNANCFIKAIDVYLGICFTFIFGALLEYACAHFCTMQHQTIIDVQRELLK----- 363

  Fly   361 PGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNY 425
                   |..|:..||..:..:...:|....|.::.....|:.....|.:..         |:..
Zfish   364 -------EFEESNGTTHLVSSMSPRKMKTEDSTKQEKPEQTVTCEENEAVEQ---------TKEK 412

  Fly   426 GTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYW 490
            |.|.:.:::.::|.                   |::..:::.:.||:::|::||::||..|:.||
Zfish   413 GCGLTTVKQMSRRA-------------------ASMMSVENPHNIDRHARILFPMAFLLINIFYW 458

  Fly   491 LFYIL 495
            |:|:|
Zfish   459 LYYLL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 169/456 (37%)
gabrpXP_005173350.2 None

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