DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and LOC562831

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_021336587.1 Gene:LOC562831 / 562831 -ID:- Length:465 Species:Danio rerio


Alignment Length:509 Identity:185/509 - (36%)
Similarity:270/509 - (53%) Gaps:96/509 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LFFFLLGAQLQLIRCIRKDVLAGRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDA 77
            ||||....:..|:..   :|..|  |.:..||..:::||:..|||.|...|:.|||.|.|||.|.
Zfish    24 LFFFRRFLENSLLNA---EVKEG--EILPPTIQKLMKGYNKYLRPFFDNGPVTVGMSLDIASIDT 83

  Fly    78 ISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDK 142
            |||:|||||.|::|.|.|.||||.|            :| :..|:|.|...|.:||||||..:.|
Zfish    84 ISEINMDYTATIFLRQRWTDERLLF------------EG-NKSLSLDGRLVELLWVPDTFIVDSK 135

  Fly   143 NSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMY 207
            .|||||:|..|:|:|:..:|.|.|.:|.|||:||.|||..||:|.|.||:::||:||.|:||:.|
Zfish   136 KSFLHDITVENRLIRIFPNGTVLYALRITTTVACNMDLTKYPMDKQTCTLQLESWGYNVNDVMFY 200

  Fly   208 WK--PTPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILI 270
            |.  ...|.|::...|.|:|:..:.|:..:....||.|.:|...|:|:|:|.||:.:||:||.|:
Zfish   201 WARGNESVSGLDTLRLAQYTVEDHYTSASEAVYETGNYPKLIFHFELKRSILYFILETYVPSSLL 265

  Fly   271 VMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAAL 334
            |:||||||||:..:..||:.:|:||||||||:..|.|:|||..: ::||||:||.:||.|:|.||
Zfish   266 VVLSWVSFWISQSSVPARICIGVTTVLTMTTLMMGARTSLPNANCFIKAIDVYLGICFSFIFGAL 330

  Fly   335 LEYAAV-----------NYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQ----- 383
            :|||..           |...:|...    ..:.:|      :.|.:...:|..|...|:     
Zfish   331 IEYAVAHFCTLHHPDCNNALMYGHHH----HHMHDC------EEEMNGMLTTISDSSRLKRRKDT 385

  Fly   384 --------DVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGI 440
                    |....|:||             |.||       |:..::            |..:.|
Zfish   386 AADPPKASDGEPEPVPS-------------GPET-------PAEPVS------------RCAKSI 418

  Fly   441 STRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
            :    :|..:.|..:..     .:|:.:.||.|||:.||:||:..||.||.:|:
Zfish   419 T----LLRKILRSVNCC-----HVKNPHYIDNYSRLTFPLSFIIVNLLYWTYYL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 182/504 (36%)
Neur_chan_LBD 47..256 CDD:280998 93/210 (44%)
Neur_chan_memb 263..490 CDD:280999 76/251 (30%)
LOC562831XP_021336587.1 Neur_chan_LBD 37..462 CDD:332142 179/493 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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