DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and glrbb

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001003587.1 Gene:glrbb / 445193 ZFINID:ZDB-GENE-040801-106 Length:494 Species:Danio rerio


Alignment Length:505 Identity:168/505 - (33%)
Similarity:258/505 - (51%) Gaps:73/505 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GAQLQLIRCIRKDVLAGRLENVTQTISN-ILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVN 82
            |.|:.....:..:.||....|.|..|.| :|..||.|:||||.|.|:...:::.|.||.:|.|..
Zfish    34 GKQVYCPSQLSSEDLARVPANSTSNILNKLLITYDPRIRPNFKGIPVEDRVNIFINSFGSIQETT 98

  Fly    83 MDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLH 147
            |||.:.::|.|.|.|.||..          ..|..||.||:.....:.:|.||.||||:|::..|
Zfish    99 MDYRVNIFLRQRWNDPRLRL----------PQDFKSDSLTVDPKMFKCLWKPDLFFANEKSANFH 153

  Fly   148 DVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKP-T 211
            |||:.|.|:.:..:|.|...||.:.||:|.:||..:|:|:|.|.:::||:|||..|:...|:. .
Zfish   154 DVTQENILLFIFRNGDVLISMRLSVTLSCPLDLTLFPMDTQRCKMQLESFGYTTDDLQFMWQSGD 218

  Fly   212 PVRGVEDAELPQFTI----IGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVM 272
            ||: :::..||||.|    |.| .|..|....||.|..:.:.|.|:|.:|:::...|.|::|||:
Zfish   219 PVQ-MDEIALPQFDIKQEDIEY-GNCTKYYAGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVV 281

  Fly   273 LSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEY 337
            |||:|||||.:|::|||.|||.:||::::..|.:.|.||::||||||||:|:.|.:|.||:|:||
Zfish   282 LSWLSFWINPDASAARVPLGILSVLSLSSECTSLASELPKVSYVKAIDIWLIACLLFGFASLVEY 346

  Fly   338 AAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDII-------------ELQDVRMSP 389
            |.|       :......|:.|....||...|::|..:..::.|             ::.:.|...
Zfish   347 AVV-------QVMLNSPKLLEAERAKIATKEKAEGKTPAKNTINGMGSTPIHVSTLQVTETRCKK 404

  Fly   390 I----PSLRRGTYNATLDSIGTETMNLGKFPPSFRITR--NYG----TGHSQLRRRAQRGISTRP 444
            :    ..||...::.           :|..|..|.::.  .||    .|.:..:.:|:......|
Zfish   405 VCTSKSDLRTNDFSI-----------VGSLPRDFELSNFDCYGKPIEVGSAFSKSQAKNNKKPPP 458

  Fly   445 RMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
            .            |..||..  ...||.|:|.:||.|||.||:.||..|:
Zfish   459 P------------KPVIPSA--AKRIDLYARALFPFSFLFFNVIYWSVYL 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 167/502 (33%)
glrbbNP_001003587.1 LIC 45..493 CDD:455710 165/491 (34%)
LGIC_ECD 79..264 CDD:475126 70/196 (36%)

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