DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and GluClalpha

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:479 Identity:152/479 - (31%)
Similarity:237/479 - (49%) Gaps:75/479 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 ENVTQTISNILQG--YDIRLRP---NFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRD 97
            |...:.:..||..  ||.|:||   |....|..|.:::.:.|...|.:|.|:|::.:...:.|.|
  Fly    31 EKEKKVLDQILGAGKYDARIRPSGINGTDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTD 95

  Fly    98 ERLAFNIFGQYFDDENDD--GISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGG 160
            |||.|           ||  |....|||:.  |.::|:||.||:|:|....|::...|..:|:..
  Fly    96 ERLKF-----------DDIQGRLKYLTLTE--ANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFP 147

  Fly   161 DGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKP-TPVRGVEDAELPQF 224
            :|:|.|.:|.:.||||.|:|..||||.|.|::.:.|||:|.:|:|..||. .||:.|::..||:|
  Fly   148 NGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVVKNLHLPRF 212

  Fly   225 TIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARV 289
            |:..:.|:....:..||.|..|.:....:|...|::.|.|:|..::|::||||||::..|..|||
  Fly   213 TLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARV 277

  Fly   290 ALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIK 354
            :||:||:|||.|.::|:.:|||.:||.||||::..:|..|||.||||:|.|||.  .:....|..
  Fly   278 SLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYA--SRSGSNKAN 340

  Fly   355 KVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSF 419
            ..||    .:.|..|                      .|.:.:.:|..|.:.|::      ..:|
  Fly   341 MHKE----NMKKKRR----------------------DLEQASLDAASDLLDTDS------NATF 373

  Fly   420 RITRNYGTGHSQ-------------LRRRAQRGISTR-PRMLHALKRGASAIKATIPKIKDVNII 470
            .:...:..|..|             |.:|.|..:..: |:..:..|...|.......:      |
  Fly   374 AMASQFARGGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKR------I 432

  Fly   471 DKYSRMIFPISFLAFNLGYWLFYI 494
            |..||:.||:.|..|||.||..|:
  Fly   433 DVISRITFPLVFALFNLVYWSTYL 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 151/476 (32%)
Neur_chan_LBD 47..256 CDD:280998 75/216 (35%)
Neur_chan_memb 263..490 CDD:280999 71/240 (30%)
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 151/476 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447357
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41384at33392
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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