DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and HisCl1

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster


Alignment Length:499 Identity:157/499 - (31%)
Similarity:234/499 - (46%) Gaps:100/499 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VSCGLFFFLLGAQLQLIRCI---RKDVLAGRLEN---VTQTISNIL----QGYDIRLRPNFGGEP 63
            ::..::...|...:|...|:   |.:..:..|.:   .:.::.:||    :.||....|...|:|
  Fly    15 IALAIYLHALEQSIQHCHCVHGYRNNTESAELVSHYESSLSLPDILPIPSKTYDKNRAPKLLGQP 79

  Fly    64 LHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAF--NIFGQYFDDENDDGISDVLTLSGD 126
            ..|...:|:.|.|:|:|.:|.|...::|.|.|||.||..  |:..||       .|.||     |
  Fly    80 TVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMSEQY-------RILDV-----D 132

  Fly   127 FAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCT 191
            :...||.||.||.|.|....|:::..|..:.|..|..:.|..:.|..|:|.|....||.|:|.|:
  Fly   133 WLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICS 197

  Fly   192 VEIESYGYTVSDVVMYWKPT-PVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRN 255
            :.|||..:||.|:|..|..| |:....:.||||..|....|.|.....:||.:..|::.|.|:|.
  Fly   198 MMIESLSHTVEDLVFIWNMTDPLVVNTEIELPQLDISNNYTTDCTIEYSTGNFTCLAIVFNLRRR 262

  Fly   256 IGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAID 320
            :||.:|.||:||.|||::||:||||..||..|||.||:|::||:.|.:|..:.|||.:|||||||
  Fly   263 LGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAID 327

  Fly   321 IYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDV 385
            :::..|.||||.:|:|:|.|| .:.|..|.|.:|          |.|:        |:|.:|.|:
  Fly   328 VWMSSCSVFVFLSLMEFAVVN-NFMGPVATKAMK----------GYSD--------ENISDLDDL 373

  Fly   386 RMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHAL 450
            : |.:...|........|:                    :..||                     
  Fly   374 K-SALQHHRESIIEPQYDT--------------------FCHGH--------------------- 396

  Fly   451 KRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
               |:||           .|||:||..||.||...|:.||..::
  Fly   397 ---ATAI-----------YIDKFSRFFFPFSFFILNIVYWTTFL 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 157/490 (32%)
Neur_chan_LBD 47..256 CDD:280998 74/215 (34%)
Neur_chan_memb 263..490 CDD:280999 73/226 (32%)
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 71/206 (34%)
Neur_chan_memb 270..>350 CDD:280999 45/80 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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