DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and nAChRalpha4

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster


Alignment Length:479 Identity:92/479 - (19%)
Similarity:185/479 - (38%) Gaps:73/479 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 NILQGYDIRLRPNFG-GEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYF 109
            ::|..|:..:||... .:.|.|.:.|.::....::..|...|..:::.|.|.|.:|.:       
  Fly    18 DLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRW------- 75

  Fly   110 DDENDDGISDVLTLSGDFAEKIWVPD-TFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTT 173
             :..:.|...:|.:..|   .||.|| ..:.|...:|  :||...| ..:..:|.|.:.......
  Fly    76 -EPKEYGGVHMLHVPSD---HIWRPDIVLYNNADGNF--EVTLATK-ATIYSEGLVEWKPPAIYK 133

  Fly   174 LACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVEDAELPQFTIIGYETND----- 233
            .:|.:|:.|:|.|.|.|.::..|:.|....|       .:|.:::.:......:|.:.::     
  Fly   134 SSCEIDVEYFPFDEQTCVLKFGSWTYDGFKV-------DLRHMDEQQGSNVVAVGVDLSEFYMSV 191

  Fly   234 ----------RKERLAT---GVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEAT 285
                      |.|:..|   ..|..::.:..::|...::.....:|.:.|..|:.::|::..: :
  Fly   192 EWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSD-S 255

  Fly   286 SARVALGITTVLTMTTISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAAL-LEYAAVNYTYWGKR 348
            ..:|.|.|:.::::......|...:|..| .|..:..||:...:.|..:: :....:|..:...:
  Fly   256 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQ 320

  Fly   349 AKKKIKKVK----ECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNAT-LDSIGTE 408
            ..|....||    :..|..:.....:....|::  :.|:|......|     .|:|| :|.:.:.
  Fly   321 THKMAPWVKRVFIDFLPAFLFIKRPTYNFETSK--LLLKDTHACFYP-----YYSATNIDRLVSS 378

  Fly   409 TMN--LGKFPPSFRITRNYGTGHS--------QLRRRAQRGISTRPRMLHALKRGASAIKATI-- 461
            ..|  |.|...|..||.|...|.|        .|...:...|:..|.|    ..|...:|:.|  
  Fly   379 GYNNSLPKEDLSQSITANGPFGGSCQVHGPVPPLTHCSSDEIAAVPDM----DIGPLGMKSPILN 439

  Fly   462 -PKIKDVNIIDKYSRMIFPISFLA 484
             |.......:.|..:..|.:.|:|
  Fly   440 NPAFSHSKCLPKIHKSCFCVRFIA 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 92/479 (19%)
Neur_chan_LBD 47..256 CDD:280998 44/228 (19%)
Neur_chan_memb 263..490 CDD:280999 48/242 (20%)
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 92/479 (19%)
Neur_chan_LBD 12..227 CDD:280998 44/229 (19%)
Neur_chan_memb 234..505 CDD:280999 48/242 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447329
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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