DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and SecCl

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster


Alignment Length:509 Identity:141/509 - (27%)
Similarity:237/509 - (46%) Gaps:85/509 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 AGRLENVTQTISNILQ--GYDIRLRP---NFGGEPLHVGMDLTIASFDAISEVNMD---YTITMY 90
            ||.|:. ||.|..:..  .||...||   :..|:.|.:.:...|..: .:..:|.|   :.:...
  Fly    39 AGSLQQ-TQLIQRLTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVY-FLQNLNSDLLQFKMHAL 101

  Fly    91 LNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKL 155
            |...::|:|||:..|.:          ||.:......:|::|:|..||||::.|.:....|::.|
  Fly   102 LQLRFQDKRLAYKAFNR----------SDNILGQKHLSERLWLPHIFFANERESSILGTDEKDVL 156

  Fly   156 VRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKP-TPVRGVEDA 219
            ..|..:|.|....|...:|.|.|:...:|.|.|.|:..:||:.|..||:::.|:| ||:....:.
  Fly   157 TSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEWEPHTPISFDPEM 221

  Fly   220 ELPQF---------TIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSW 275
            .|.::         ||:..:.::.:.....|.|..||.:..|:|.||:::...||||::||.:||
  Fly   222 RLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISW 286

  Fly   276 VSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAV 340
            ||||:..:|:..|:.||.:|:|:..|:|:....:||::||:|..:::.:.|..|:|.:|:|:|.|
  Fly   287 VSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFV 351

  Fly   341 NYTYWGKRAKKKIKKV---------------KECCPGKIGKSERSETCSTTEDIIELQDVRMSPI 390
            | |.|.::...::|||               :....|.:....|:.:||:.::|:       |..
  Fly   352 N-TIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSSLDNIV-------SST 408

  Fly   391 PSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQL---RRRAQRG-----ISTRPRML 447
            .|:|.          |..|:|.|        ..||.|.|..|   |......     .|.|....
  Fly   409 ESVRN----------GNGTVNQG--------FNNYLTVHPNLPIIRTECAEADTVSICSARTNND 455

  Fly   448 HAL-----KRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLF-YIL 495
            |.:     |:.......|:...:....||:.||.:||..|||||..||.| |:|
  Fly   456 HIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWTFVYVL 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 139/505 (28%)
Neur_chan_LBD 47..256 CDD:280998 56/226 (25%)
Neur_chan_memb 263..490 CDD:280999 72/254 (28%)
SecClNP_001261986.1 LIC 43..505 CDD:273305 135/499 (27%)
Neur_chan_LBD 44..267 CDD:280998 59/234 (25%)
Neur_chan_memb 275..503 CDD:280999 72/253 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447277
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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