Protein Alignment Lcch3 and gabra6a

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: XP_005173169.1
• Gene: gabra6a / 393704
• ZFINID: ZDB-GENE-040426-1692
• Length: 435
• Species: Danio rerio
• Alignment Length: 470
• Identity: 168/470 - (35%)
• Similarity: 239/470 - (50%)
• Gaps: 84/470 - (17%)

  Fly    38 ENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAF 102
            ||:|:.:..:|:|||.||||..|.....|..|:.:.||..:|:|||::|:.|:..|.|.||||||
Zfish    25 ENITRILDGLLEGYDNRLRPGSGVSVTEVKTDIFVTSFGPVSDVNMEFTMDMFFRQMWVDERLAF 89

  Fly   103 NIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYG 167
                        .|..::|.|:....:|||.|||||.|.:.|..|::|..|||.|:..:|.|.|.
Zfish    90 ------------QGPIEILPLNNRMVDKIWTPDTFFRNARKSLAHNMTSPNKLFRIMQNGTVFYT 142

  Fly   168 MRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGV--------EDAELPQF 224
            ||.|.:..|.|.|..:|:|...|.:...||.||..::|..|:    :|:        |.:.|.|:
Zfish   143 MRLTVSAVCPMVLRDFPMDGHTCPLYFGSYAYTNREIVYTWR----KGLEASVDFPPESSSLLQY 203

  Fly   225 TIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARV 289
            .::|........:.:||:|....:.|.|||.:||.:.|||:|.|::|:||.||||||.|:..||.
Zfish   204 DLLGQTLFTETYKFSTGLYSVQVVHFYLQRKLGYHLIQTYIPLIMVVVLSQVSFWINKESVPART 268

  Fly   290 ALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY--TYWGKRAKKK 352
            ..||||||||||:|...|||||::||..|:|.::.:||.||.:||:|:|||||  |....|...|
Zfish   269 VAGITTVLTMTTLSISARSSLPKVSYATAMDWFIAVCFAFVASALVEFAAVNYYATLEANRENHK 333

  Fly   353 IKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPP 417
            :.:      |.|.:|:    ...::|..|......|.....|||                  :|.
Zfish   334 LPR------GSIVESQ----AQGSDDEPESPQSDTSAYSRKRRG------------------YPV 370

  Fly   418 SFRITRNYGTGHSQLRRRAQ---RGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFP 479
            |           ...|.|..   :|.:..|.|:.|   |.||             ||||||::||
Zfish   371 S-----------EAPRTRVPIFLQGSAFPPNMMLA---GTSA-------------IDKYSRILFP 408

  Fly   480 ISFLAFNLGYWLFYI 494
            ::|..|||.||..|:
Zfish   409 LAFGIFNLVYWYIYL 423

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	167/467 (36%)
		Neur_chan_LBD	47..256	CDD:280998	76/216 (35%)
		Neur_chan_memb	263..490	CDD:280999	83/231 (36%)
gabra6a	XP_005173169.1	LIC	2..422	CDD:273305	167/467 (36%)
		Neur_chan_LBD	28..234	CDD:280998	76/221 (34%)
		Neur_chan_memb	242..419	CDD:280999	83/231 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.810