Protein Alignment Lcch3 and Glra4

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: NP_001178843.1
• Gene: Glra4 / 367912
• RGDID: 1564103
• Length: 456
• Species: Rattus norvegicus
• Alignment Length: 501
• Identity: 191/501 - (38%)
• Similarity: 268/501 - (53%)
• Gaps: 88/501 - (17%)

  Fly    13 LFFFLLGAQLQLIRCIRKDVLAGRLENVTQTISNIL-------QGYDIRLRPNFGGEPLHVGMDL 70
            |.:.|.|..|..:...::||.:|...:...:.|:.|       .|||.|:||||.|.|::|..::
  Rat    12 LLWTLPGKVLLSVALAKEDVKSGPKGSQPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNI 76

  Fly    71 TIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPD 135
            .|.||.:::|..|||.:.::|.|.|.|.|||:.   :|.||.        |.|.....:.||.||
  Rat    77 FINSFGSVTETTMDYRVNVFLRQQWNDPRLAYR---EYPDDS--------LDLDPSMLDSIWKPD 130

  Fly   136 TFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYT 200
            .||||:|.:..|:||..|||:|:..:|.|.|.:|.|..|:|.|||..:|:|.|.||:::||:|||
  Rat   131 LFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYT 195

  Fly   201 VSDVVMYW-KPTP-VRGVEDAELPQFTI-----IGYETNDRKERLATGVYQRLSLSFKLQRNIGY 258
            ::|::..| :..| |:..|...||||.:     :||.|    :...||.:..:.:.|.|:|.:||
  Rat   196 MNDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDLGYCT----KHYNTGKFTCIEVKFHLERQMGY 256

  Fly   259 FVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYL 323
            ::.|.|:||:|||:|||||||||.:|..|||.|||||||||||.|:|.|:|||::||||||||::
  Rat   257 YLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWM 321

  Fly   324 VMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMS 388
            .:|.:|||||||||||||:.   .|..|:..:::.       |..|..   ..||||
  Rat   322 AVCLLFVFAALLEYAAVNFV---SRQHKEFMRLRR-------KQRRRH---MEEDII-------- 365

  Fly   389 PIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRA--QRGIS----TRPRML 447
                 |.|.:                      ..|.||.||....|..  ..|.|    ..|..|
  Rat   366 -----REGRF----------------------YFRGYGLGHCLQARDGGPMEGSSIYSPQPPTTL 403

  Fly   448 HALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
              ||.|.:..|..:.:.|.   ||..||.:||.:||.||:.||:.|
  Rat   404 --LKEGETMRKVYVDRAKR---IDTISRAVFPFTFLVFNIFYWVVY 444

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	189/497 (38%)
		Neur_chan_LBD	47..256	CDD:280998	84/222 (38%)
		Neur_chan_memb	263..490	CDD:280999	93/232 (40%)
Glra4	NP_001178843.1	LIC	9..444	CDD:273305	190/499 (38%)
		Neur_chan_LBD	47..254	CDD:280998	84/221 (38%)
		Neur_chan_memb	261..441	CDD:280999	93/232 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810