DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and lgc-38

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001355511.1 Gene:lgc-38 / 3565717 WormBaseID:WBGene00017389 Length:479 Species:Caenorhabditis elegans


Alignment Length:468 Identity:177/468 - (37%)
Similarity:256/468 - (54%) Gaps:53/468 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 NVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFN 103
            |||:.:..::..:|.|:|||:||.|:.|.:...:.:..|:|||:||||:.:||.|.|:|.|||: 
 Worm    51 NVTRLLDKLIASHDRRIRPNYGGPPIEVNITAHVTTISAVSEVSMDYTLDLYLRQIWKDPRLAW- 114

  Fly   104 IFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGM 168
                    |:|  :.|.||:..|..:.||.|||||.|:|.||.|:.|..|..:|:...|.|...:
 Worm   115 --------ESD--VEDSLTIGIDMVKTIWTPDTFFPNEKKSFFHEATSHNSFLRIDNHGNVLRSI 169

  Fly   169 RFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGV-EDAELPQFTIIGYETN 232
            |.|.|..|.|.||.:|||.|.|.:|:|||||:..|::.:|..|....: |:..|..|||..::..
 Worm   170 RLTVTANCPMSLHTFPLDRQECALEVESYGYSTKDIIYHWHGTNAVTIDENVHLAHFTIGEHKHI 234

  Fly   233 DRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVL 297
            :|...|:||.|.||:..|..:||||:::.|.|.||.|||::||||||:|.||..||||:|:||||
 Worm   235 ERTISLSTGNYSRLTAYFLFKRNIGFYLIQIYFPSSLIVVISWVSFWLNREAVQARVAIGVTTVL 299

  Fly   298 TMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPG 362
            ||||:.|...:|||::||||::|::|.:||..|||:||||||:.|      ..|:.:.|....|.
 Worm   300 TMTTLMTSTNASLPKVSYVKSLDVFLGVCFFIVFASLLEYAAIGY------LMKRNRSVPAASPV 358

  Fly   363 KIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGT 427
            :..:         ||:..|:|     ..|...||..|.....:..|.        |.:.:||  .
 Worm   359 QYYE---------TEEFFEIQ-----CHPKFVRGAINYCDGVLKREA--------SRKKSRN--R 399

  Fly   428 GHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKI--KDVN---------IIDKYSRMIFPIS 481
            ..|.::......|..||...|..:|........:|.|  |..|         .:|.:||..|||.
 Worm   400 RDSSMKNYQNNNIHHRPSDGHVDQRIPLLSMVPMPPIPFKPQNGAWGKVRPAQVDLFSRFAFPIF 464

  Fly   482 FLAFNLGYWLFYI 494
            |:.|::.||.:||
 Worm   465 FVIFHIVYWTYYI 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 175/465 (38%)
Neur_chan_LBD 47..256 CDD:280998 83/209 (40%)
Neur_chan_memb 263..490 CDD:280999 83/237 (35%)
lgc-38NP_001355511.1 LIC 42..476 CDD:273305 175/465 (38%)
LGIC_ECD_GABAR_RDL-like 76..257 CDD:349809 74/191 (39%)
Cys-loop 177..191 CDD:349809 8/13 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101786
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.720

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