DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabrr3

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001074659.1 Gene:Gabrr3 / 328699 MGIID:3588203 Length:464 Species:Mus musculus


Alignment Length:455 Identity:168/455 - (36%)
Similarity:254/455 - (55%) Gaps:62/455 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
            ::.:|...||.|||.|:.||:|:.:.|.|:|||||||:|:|.||..||:||||:|          
Mouse    64 IEDHDFSTRPGFGGSPVPVGIDVQVESIDSISEVNMDFTMTFYLRHYWKDERLSF---------- 118

  Fly   113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACM 177
             ....:..:|......:||||||.||.:.|.||:||.|..|.::|:..||.|.:.:|.|.:..|.
Mouse   119 -PSTTNKSMTFDRRLLQKIWVPDIFFVHSKRSFIHDTTVENIMLRVHPDGNVLFSLRITVSAMCF 182

  Fly   178 MDLHYYPLDSQNCTVEIESYGYTVSDVVMYWK--PTPVRGVEDAELPQFTIIGYETNDRKERLA- 239
            ||...:|||:|||::|:|||.|...|:::|||  ...:...|...|.||.|   |.......|| 
Mouse   183 MDFSRFPLDTQNCSLELESYAYNEEDLMLYWKHGNKSLNTEERISLSQFFI---EEFSASSGLAF 244

  Fly   240 ---TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTT 301
               ||.|.||.::|.|:|::.:||.|||.|::|:||||||||||:..|..|||:|||||||||:|
Mouse   245 YSSTGWYYRLFINFVLRRHVFFFVLQTYFPAMLMVMLSWVSFWIDRRAVPARVSLGITTVLTMST 309

  Fly   302 ISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGK 366
            :.|||.:|:|::|||||:|:|:.:..:|||.:::|||.|||....:..|:..::      |||  
Mouse   310 VVTGVSASMPQVSYVKAVDVYMWVSSLFVFLSVIEYATVNYLTTVEEWKQLNRR------GKI-- 366

  Fly   367 SERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSF--RITRNYGTGH 429
                   |....|..:|.:...       |.|:.:...:...:.:|.....|.  :.|.:.....
Mouse   367 -------SGMYHIDAVQAMAFD-------GCYHDSETDVDQTSFSLHSEEDSMSTKFTGSPCADS 417

  Fly   430 SQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
            ||::|::..|  ...|::                :::.::||.|||::||..::.|||.||..|:
Mouse   418 SQIKRKSLGG--NVGRII----------------LENNHVIDTYSRIVFPTVYIIFNLFYWGIYV 464

  Fly   495  494
            Mouse   465  464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 167/452 (37%)
Neur_chan_LBD 47..256 CDD:280998 86/213 (40%)
Neur_chan_memb 263..490 CDD:280999 76/228 (33%)
Gabrr3NP_001074659.1 LIC 58..463 CDD:273305 167/452 (37%)
Neur_chan_LBD 59..264 CDD:280998 86/213 (40%)
Neur_chan_memb 271..460 CDD:280999 76/228 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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