DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabra5

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_058991.2 Gene:Gabra5 / 29707 RGDID:61859 Length:464 Species:Rattus norvegicus


Alignment Length:467 Identity:166/467 - (35%)
Similarity:230/467 - (49%) Gaps:78/467 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 TQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIF 105
            |:.:..:|.|||.||||..|.....|..|:.:.||..:|:..|:|||.::..|.|:||||.|.  
  Rat    50 TRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFK-- 112

  Fly   106 GQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRF 170
                      |....|.|:...|.|||.|||||.|.|.|..|::|..|||:||..||.:.|.||.
  Rat   113 ----------GPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRL 167

  Fly   171 TTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVEDAE----LPQFTIIGYET 231
            |.:..|.|.|..:|:|:..|.::..||.|..|:||..|.....:.|..||    |.|:.::|...
  Rat   168 TISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGSTKSVVVAEDGSRLNQYHLMGQTV 232

  Fly   232 NDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTV 296
            .......:||.|..::..|.|:|.|||||.|||||.|:.|:||.||||:|.|:..||...|:|||
  Rat   233 GTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTV 297

  Fly   297 LTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY---TYWGKRAKKKIKKVKE 358
            |||||:|...|:|||:::|..|:|.::.:|:.|||:||:|:|.|||   ..|....||.::    
  Rat   298 LTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALE---- 358

  Fly   359 CCPGKIGKSER------SETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPP 417
              ..||.|.||      |....||..:....::....:|.   ||.||    :||.:        
  Rat   359 --AAKIKKKERELILNKSTNAFTTGKLTHPPNIPKEQLPG---GTGNA----VGTAS-------- 406

  Fly   418 SFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISF 482
                                         :.|.:...|..|.|   ...::.|||.||::|||.|
  Rat   407 -----------------------------IRASEEKTSESKKT---YNSISKIDKMSRIVFPILF 439

  Fly   483 LAFNLGYWLFYI 494
            ..|||.||..|:
  Rat   440 GTFNLVYWATYL 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 165/464 (36%)
Neur_chan_LBD 47..256 CDD:280998 78/212 (37%)
Neur_chan_memb 263..490 CDD:280999 78/235 (33%)
Gabra5NP_058991.2 LIC 15..450 CDD:273305 165/464 (36%)
LGIC_ECD_GABAAR_A5 58..256 CDD:349839 76/209 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 382..414 8/75 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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