Protein Alignment Lcch3 and Gabrr2

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: XP_038965308.1
• Gene: Gabrr2 / 29695
• RGDID: 61902
• Length: 491
• Species: Rattus norvegicus
• Alignment Length: 450
• Identity: 178/450 - (39%)
• Similarity: 260/450 - (57%)
• Gaps: 56/450 - (12%)

  Fly    48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
            ::.:|..:||.|||..:.||:|:.:.|.|:||||:||:|:|:||..|||||||||
  Rat    87 VEDHDFTMRPAFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWRDERLAF---------- 141

  Fly   113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACM 177
             ....:..:|..|...:||||||.||.:.|.||.||.|..|.::|:..||.|.|.||.|.|..|.
  Rat   142 -PSSSNRSMTFDGRLVKKIWVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCN 205

  Fly   178 MDLHYYPLDSQNCTVEIESYGYTVSDVVMYWK--PTPVRGVEDAELPQFTIIGYETNDRKERLA- 239
            ||..::|||||.|::|:|||.||..|:::|||  ...::..|...|.||.|..:.|.   .|||
  Rat   206 MDFSHFPLDSQTCSLELESYAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQKFHTT---SRLAF 267

  Fly   240 ---TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTT 301
               ||.|.||.::|.|:|:|.:|:.|||.|:.|:||||||||||:|.|..|||:|||.|||||:|
  Rat   268 YSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDHRAVPARVSLGIMTVLTMST 332

  Fly   302 ISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY-TYWGKRAKKKIKKVKECCPGKIG 365
            |.|||.:|:||:||::|:||||.:.|||||.::|||||||| |...::.::|::....|..|.:
  Rat   333 IITGVNASMPRVSYIRAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQEQKERKLRDKFPCTCGML- 396

  Fly   366 KSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHS 430
               .|.|.:..                   |:|:.      :|..:|..:|      |::.....
  Rat   397 ---HSRTMTLD-------------------GSYSE------SEANSLAGYP------RSHILPEE 427

  Fly   431 QLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYW 490
            :.:.:....::....:..:.|:|....:..:...::.:.||||||:|||..::.|||.||
  Rat   428 ERQDKIVVHLALNSELTSSRKKGLLKGQMGLYIFQNTHAIDKYSRLIFPAFYIVFNLIYW 487

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	177/449 (39%)
		Neur_chan_LBD	47..256	CDD:280998	92/213 (43%)
		Neur_chan_memb	263..490	CDD:280999	81/227 (36%)
Gabrr2	XP_038965308.1	LIC	87..490	CDD:273305	177/449 (39%)
		LGIC_ECD_GABAAR_rho	102..287	CDD:349806	86/198 (43%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.910