DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabrd

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_058985.1 Gene:Gabrd / 29689 RGDID:61901 Length:449 Species:Rattus norvegicus


Alignment Length:474 Identity:180/474 - (37%)
Similarity:265/474 - (55%) Gaps:63/474 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DVLAGRLE-NVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQY 94
            |.:...|| :....:..:::||....||..||.|::|.:.|.:||.|.|||.||:||:|::|:|.
  Rat    30 DYVGSNLEISWLPNLDGLMEGYARNFRPGIGGPPVNVALALEVASIDHISEANMEYTMTVFLHQS 94

  Fly    95 WRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLG 159
            |||.||::|            ..::.|.|...|.:|:|:||||..|.|:::.||||..|||:||.
  Rat    95 WRDSRLSYN------------HTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQ 147

  Fly   160 GDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPT--PVRGVEDAELP 222
            .||.:.|.:|.|:|:||.|||..||:|.|.|.:::|||||:..|:|.||...  .:.|::..:|.
  Rat   148 PDGVILYSIRITSTVACDMDLAKYPMDEQECMLDLESYGYSSEDIVYYWSENQEQIHGLDRLQLA 212

  Fly   223 QFTIIGYE-TNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATS 286
            ||||..|. |.:.....:.|.:.||||.|:|:||.|.::.|:|:||:|:|.:|||||||:..|..
  Rat   213 QFTITSYRFTTELMNFKSAGQFPRLSLHFQLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVP 277

  Fly   287 ARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTY-WGKRAK 350
            |||:|||||||||||:....||||||.|.:||:|:|..:|:|||||||:|||..::.. :.|:.|
  Rat   278 ARVSLGITTVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALVEYAFAHFNADYRKKRK 342

  Fly   351 KKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNA----TLDSIGTETMN 411
            .|:|..|          .|:|           .|||            ||    :|.:.|. :..
  Rat   343 AKVKVTK----------PRAE-----------MDVR------------NAIVLFSLSAAGV-SQE 373

  Fly   412 LGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRM 476
            |.......|:..|....:..:...|::...:||       .|...|::.:..| |.:.||.|:|.
  Rat   374 LAISRRQGRVPGNLMGSYRSVEVEAKKEGGSRP-------GGPGGIRSRLKPI-DADTIDIYARA 430

  Fly   477 IFPISFLAFNLGYWLFYIL 495
            :||.:|.|.|:.||..|.:
  Rat   431 VFPAAFAAVNIIYWAAYTM 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 179/470 (38%)
Neur_chan_LBD 47..256 CDD:280998 89/211 (42%)
Neur_chan_memb 263..490 CDD:280999 82/231 (35%)
GabrdNP_058985.1 LGIC_ECD 63..246 CDD:355788 82/194 (42%)
LGIC_TM 249..>337 CDD:365787 50/87 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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