DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and GABRR1

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_002033.2 Gene:GABRR1 / 2569 HGNCID:4090 Length:479 Species:Homo sapiens


Alignment Length:487 Identity:187/487 - (38%)
Similarity:269/487 - (55%) Gaps:74/487 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 AQLQLIRCIRK--DVLAGRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVN 82
            |..|:...:|:  |:....|....|.:.  :..:|..:||.|||..:.||:|:.:.|.|:||||:
Human    53 AHKQVSPILRRSPDITKSPLTKSEQLLR--IDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVD 115

  Fly    83 MDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLH 147
            ||:|:|:||..||:||||:|         .:.:.:|  :|..|...:||||||.||.:.|.||:|
Human   116 MDFTMTLYLRHYWKDERLSF---------PSTNNLS--MTFDGRLVKKIWVPDMFFVHSKRSFIH 169

  Fly   148 DVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKP-- 210
            |.|..|.::|:..||.|.|.:|.|.|..|.||...:|||:|.|::|||||.||..|:::|||.  
Human   170 DTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGN 234

  Fly   211 TPVRGVEDAELPQFTIIGYETNDRKERLA----TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIV 271
            ..::..|...|.||.|..:.|.   .:||    ||.|.||.::|.|:|:|.:|:.|||.|:.|:|
Human   235 DSLKTDERISLSQFLIQEFHTT---TKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMV 296

  Fly   272 MLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLE 336
            |||||||||:..|..|||.|||||||||:||.|||.:|:||:||:||:||||.:.|||||.::||
Human   297 MLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLE 361

  Fly   337 YAAVNY-TYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYN- 399
            |||||| |...:|.::|:::...|..|                       ...|..::..|.|: 
Human   362 YAAVNYLTTVQERKEQKLREKLPCTSG-----------------------LPPPRTAMLDGNYSD 403

  Fly   400 ---ATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATI 461
               ..||:...|.   |:.|....:.....:..|..:|::||......|:               
Human   404 GEVNDLDNYMPEN---GEKPDRMMVQLTLASERSSPQRKSQRSSYVSMRI--------------- 450

  Fly   462 PKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
                |.:.||||||:|||.:::.|||.||..:
Human   451 ----DTHAIDKYSRIIFPAAYILFNLIYWSIF 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 187/485 (39%)
Neur_chan_LBD 47..256 CDD:280998 89/214 (42%)
Neur_chan_memb 263..490 CDD:280999 87/231 (38%)
GABRR1NP_002033.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 32..55 1/1 (100%)
LIC 75..478 CDD:273305 182/463 (39%)
Neur_chan_LBD 76..281 CDD:280998 90/220 (41%)
Neur_chan_memb 288..475 CDD:280999 87/231 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.910

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