Protein Alignment Lcch3 and Glra1

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: XP_006246440.1
• Gene: Glra1 / 25674
• RGDID: 2704
• Length: 457
• Species: Rattus norvegicus
• Alignment Length: 506
• Identity: 190/506 - (37%)
• Similarity: 268/506 - (52%)
• Gaps: 99/506 - (19%)

  Fly    13 LFFFLLGAQLQLIRCIRKDVLAGRLENVTQTISNIL-------QGYDIRLRPNFGGEPLHVGMDL 70
            :.||.|.|.        |:..|.|......:.|:.|       .|||.|:||||.|.|::|..::
  Rat    15 IVFFSLAAS--------KEADAARSAPKPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVSCNI 71

  Fly    71 TIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPD 135
            .|.||.:|:|..|||.:.::|.|.|.|.|||:|   :|.||.        |.|.....:.||.||
  Rat    72 FINSFGSIAETTMDYRVNIFLRQQWNDPRLAYN---EYPDDS--------LDLDPSMLDSIWKPD 125

  Fly   136 TFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYT 200
            .||||:|.:..|::|..|||:|:..:|.|.|.:|.|.||||.|||..:|:|.|.|.:::||:|||
  Rat   126 LFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYT 190

  Fly   201 VSDVVMYWKPTPVRGVEDA-ELPQFTIIGYETNDRK---ERLATGVYQRLSLSFKLQRNIGYFVF 261
            ::|::..|:......|.|. .||||.:  .|..|.:   :...||.:..:...|.|:|.:||::.
  Rat   191 MNDLIFEWQEQGAVQVADGLTLPQFIL--KEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLI 253

  Fly   262 QTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMC 326
            |.|:||:|||:|||:|||||.:|..|||.|||||||||||.|:|.|:|||::||||||||::.:|
  Rat   254 QMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVC 318

  Fly   327 FVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIP 391
            .:|||:|||||||||:.   .|..|::.:.:        :..|.               ..||:
  Rat   319 LLFVFSALLEYAAVNFV---SRQHKELLRFR--------RKRRH---------------HKSPM- 356

  Fly   392 SLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASA 456
                  .|...|..|.|    |:|..|     .||.|.:.|  :|:.|||.         :||:.
  Rat   357 ------LNLFQDDEGGE----GRFNFS-----AYGMGPACL--QAKDGISV---------KGANN 395

  Fly   457 IKATIPK--------------IKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
            ...|.|.              |:....|||.||:.||::||.||:.||:.|
  Rat   396 NNTTNPAPAPSKSPEEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIY 446

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	189/502 (38%)
		Neur_chan_LBD	47..256	CDD:280998	84/219 (38%)
		Neur_chan_memb	263..490	CDD:280999	92/240 (38%)
Glra1	XP_006246440.1	LIC	7..446	CDD:273305	189/504 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810