DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and GABRG2

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_944493.2 Gene:GABRG2 / 2566 HGNCID:4087 Length:515 Species:Homo sapiens


Alignment Length:512 Identity:166/512 - (32%)
Similarity:240/512 - (46%) Gaps:119/512 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 NVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFN 103
            :||..::|:|:|||.:|||:.|.:|..:..|:.:.|...::.:||:|||.::..|.|.|.||.||
Human    65 DVTVILNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 129

  Fly   104 IFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGM 168
                        ....||.|:.:...|||:|||||.|.|.:..|.:|..|:::|:..||.|.|.:
Human   130 ------------STIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTL 182

  Fly   169 RFTTTLACMMDLHYYPLDSQNCTVEIESY------------------------------------ 197
            |.|....|.:.||.:|:|..:|.:|..|:                                    
Human   183 RLTIDAECQLQLHNFPMDEHSCPLEFSSWSRSIAQAGMCSGVISAHYSLRFWGSTDPPTLASRVA 247

  Fly   198 ----GYTVSDVVMYWKPTPVRGVEDA---ELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRN 255
                ||...::|..||.:.|. |.|.   .|.||:.:|........:..:|.|..:|:.|.|.|.
Human   248 GISDGYPREEIVYQWKRSSVE-VGDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRR 311

  Fly   256 IGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAID 320
            :|||..|||:|..|||:|||||||||.:|..||.:|||||||||||:||..|.|||::|||.|:|
Human   312 MGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMD 376

  Fly   321 IYLVMCFVFVFAALLEYAAVNYTYWGKR-AKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQD 384
            :::.:||:|||:||:||..::|....:: :|.|.||.|.                          
Human   377 LFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDKDKKKKN-------------------------- 415

  Fly   385 VRMSPIPSLRRGTYNA-TLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPR--- 445
                  |.||..::.| |:|.          .|.|..|..|..| |.| .|..:.|......   
Human   416 ------PLLRMFSFKAPTIDI----------RPRSATIQMNNAT-HLQ-ERDEEYGYECLDGKDC 462

  Fly   446 -----MLHALKRGA---SAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
                 .....:.||   ..|...|.|      :|.|:|:.||.:|..|||.||:.|:
Human   463 ASFFCCFEDCRTGAWRHGRIHIRIAK------MDSYARIFFPTAFCLFNLVYWVSYL 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 165/509 (32%)
Neur_chan_LBD 47..256 CDD:280998 72/251 (29%)
Neur_chan_memb 263..490 CDD:280999 84/239 (35%)
GABRG2NP_944493.2 LIC 69..512 CDD:273305 163/505 (32%)
Neur_chan_LBD 69..312 CDD:280998 73/255 (29%)
Neur_chan_memb 319..509 CDD:280999 84/239 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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