DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and GABRA3

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_000799.1 Gene:GABRA3 / 2556 HGNCID:4077 Length:492 Species:Homo sapiens


Alignment Length:482 Identity:172/482 - (35%)
Similarity:248/482 - (51%) Gaps:75/482 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DVLAGRLENV---TQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLN 92
            |:.....:|:   |:.:..:|.|||.||||..|.....|..|:.:.||..:|:.:|:|||.::..
Human    55 DIPDDSTDNITIFTRILDRLLDGYDNRLRPGLGDAVTEVKTDIYVTSFGPVSDTDMEYTIDVFFR 119

  Fly    93 QYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVR 157
            |.|.||||.|            ||...:|.|:...|.|||.|||||.|.|.|..|::|..|||:|
Human   120 QTWHDERLKF------------DGPMKILPLNNLLASKIWTPDTFFHNGKKSVAHNMTTPNKLLR 172

  Fly   158 LGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVEDAE-- 220
            |..:|.:.|.||.|....|.|.|..:|:|...|.::..||.||.::||..|.....:.||.|:  
Human   173 LVDNGTLLYTMRLTIHAECPMHLEDFPMDVHACPLKFGSYAYTTAEVVYSWTLGKNKSVEVAQDG 237

  Fly   221 --LPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHE 283
              |.|:.::|:.......|.:||.|..::..|.|:|.|||||.|||||.|:.|:||.||||:|.|
Human   238 SRLNQYDLLGHVVGTEIIRSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRE 302

  Fly   284 ATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY---TYW 345
            :..||...|:||||||||:|...|:|||:::|..|:|.::.:|:.|||:||:|:|.|||   ..|
Human   303 SVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRSW 367

  Fly   346 GKRAKK-----KIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSI 405
            ....||     ::||.....|.|        ..|||.:|:               ||        
Human   368 AWEGKKVPEALEMKKKTPAAPAK--------KTSTTFNIV---------------GT-------- 401

  Fly   406 GTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIK---DV 467
             |..:||.|           .|..|.:.:.|....|:.|.::.:.|  |:.::.:..:.|   .|
Human   402 -TYPINLAK-----------DTEFSTISKGAAPSASSTPTIIASPK--ATYVQDSPTETKTYNSV 452

  Fly   468 NIIDKYSRMIFPISFLAFNLGYWLFYI 494
            :.:||.||:|||:.|..|||.||..|:
Human   453 SKVDKISRIIFPVLFAIFNLVYWATYV 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 171/479 (36%)
GABRA3NP_000799.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..54
LIC 69..478 CDD:455710 168/465 (36%)
LGIC_ECD_GABAAR_A3 75..274 CDD:349837 78/210 (37%)
Cys-loop 191..205 CDD:349837 5/13 (38%)
Blue background indicates that the domain is not in the aligned region.

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