DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lcch3 and Glra2

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_036700.1 Gene:Glra2 / 24397 RGDID:2705 Length:452 Species:Rattus norvegicus


Alignment Length:501 Identity:189/501 - (37%)
Similarity:269/501 - (53%) Gaps:79/501 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VGVSCGLFFFLLGA-QLQLIRCIRKDVLAGRLENVTQTISNIL-------QGYDIRLRPNFGGEP 63
            |.:...||.|.||. ..:...|...|..:|:..:.|.:.|:.|       .|||.|:||||.|.|
  Rat     6 VNILTALFAFFLGTNHFREAFCKDHDSRSGKHPSQTLSPSDFLDKLMGRTSGYDARIRPNFKGPP 70

  Fly    64 LHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFA 128
            ::|..::.|.||.:::|..|||.:.::|.|.|.|.|||::   :|.||.        |.|.....
  Rat    71 VNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYS---EYPDDS--------LDLDPSML 124

  Fly   129 EKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVE 193
            :.||.||.||||:|.:..||||..|||:|:..:|.|.|.:|.|.||:|.|||..:|:|.|.||::
  Rat   125 DSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQ 189

  Fly   194 IESYGYTVSDVVMYW-KPTPVRGVEDAELPQFTI-----IGYETNDRKERLATGVYQRLSLSFKL 252
            :||:|||::|::..| ...||:..|...||||.:     :||.|    :...||.:..:.:.|.|
  Rat   190 LESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCT----KHYNTGKFTCIEVKFHL 250

  Fly   253 QRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVK 317
            :|.:||::.|.|:||:|||:|||||||||.:|..|||||||||||||||.|:|.|:|||::||||
  Rat   251 ERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVK 315

  Fly   318 AIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIEL 382
            ||||::.:|.:|||||||||||||:.   .|..|:..:::          .|.:..:..||:   
  Rat   316 AIDIWMAVCLLFVFAALLEYAAVNFV---SRQHKEFLRLR----------RRQKRQNKEEDV--- 364

  Fly   383 QDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRML 447
                      .|...:|.:                      .||.||....:......:|....|
  Rat   365 ----------TRESRFNFS----------------------GYGMGHCLQVKDGTAVKATPANPL 397

  Fly   448 HALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
            ....:.|.|||...  :.....||..||..||::||.||:.||:.|
  Rat   398 PQPPKDADAIKKKF--VDRAKRIDTISRAAFPLAFLIFNIFYWITY 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 185/491 (38%)
Neur_chan_LBD 47..256 CDD:280998 86/221 (39%)
Neur_chan_memb 263..490 CDD:280999 86/226 (38%)
Glra2NP_036700.1 LIC 46..441 CDD:273305 177/459 (39%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 236..241 2/4 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.