Sequence 1: | NP_996469.1 | Gene: | Lcch3 / 32554 | FlyBaseID: | FBgn0010240 | Length: | 496 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_620252.1 | Gene: | Gabrr3 / 192258 | RGDID: | 621564 | Length: | 464 | Species: | Rattus norvegicus |
Alignment Length: | 456 | Identity: | 173/456 - (37%) |
---|---|---|---|
Similarity: | 257/456 - (56%) | Gaps: | 64/456 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
Fly 113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACM 177
Fly 178 MDLHYYPLDSQNCTVEIESYGYTVSDVVMYWK--PTPVRGVEDAELPQFTIIGYETNDRKERLA- 239
Fly 240 ---TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTT 301
Fly 302 ISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGK 366
Fly 367 SERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGT---G 428
Fly 429 HSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
Fly 494 I 494 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lcch3 | NP_996469.1 | LIC | 15..493 | CDD:273305 | 172/453 (38%) |
Neur_chan_LBD | 47..256 | CDD:280998 | 86/213 (40%) | ||
Neur_chan_memb | 263..490 | CDD:280999 | 80/229 (35%) | ||
Gabrr3 | NP_620252.1 | LIC | 58..463 | CDD:273305 | 172/453 (38%) |
LGIC_ECD | 79..264 | CDD:355788 | 80/198 (40%) | ||
Cys-loop | 181..195 | CDD:349787 | 7/13 (54%) | ||
Interaction with SQSTM1. /evidence=ECO:0000269|PubMed:12431995 | 344..445 | 29/141 (21%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3644 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D226476at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.920 |