DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lcch3 and glra4b

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001189440.1 Gene:glra4b / 192125 ZFINID:ZDB-GENE-020402-2 Length:492 Species:Danio rerio


Alignment Length:495 Identity:185/495 - (37%)
Similarity:278/495 - (56%) Gaps:63/495 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LIRCI-RKDVLAGRLENVTQTISNIL-------QGYDIRLRPNFGGEPLHVGMDLTIASFDAISE 80
            :|||: .|::.:..:.....:.|:.|       .|||.|:||||.|.|::|..::.|.||.:|:|
Zfish    22 VIRCVFSKELKSPSVRTKPMSPSDFLDKLMGKTSGYDARIRPNFKGPPVNVTCNIFINSFGSITE 86

  Fly    81 VNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSF 145
            ..|||.:.::|.|.|.|.|||:.   :|.||.        |.|.....:.||.||.||||:|.:.
Zfish    87 TTMDYRLNVFLRQQWNDPRLAYK---EYPDDS--------LDLDPSMLDSIWKPDLFFANEKGAN 140

  Fly   146 LHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYW-K 209
            .|:||..|||:|:..:|.|.|.:|.|..|:|.|||..:|:|:|.||:::||:|||::|::..| .
Zfish   141 FHEVTTDNKLLRIFQNGNVLYSIRLTLILSCPMDLKNFPMDTQTCTMQLESFGYTMNDLIFQWLD 205

  Fly   210 PTPVRGVEDAELPQFTI-----IGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSIL 269
            ..||:..:|..||||.:     :||.|    :...||.:..:.:.|.|:|.:||::.|.|:||:|
Zfish   206 EGPVQVADDLMLPQFVLKEEKDLGYCT----KHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLL 266

  Fly   270 IVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAAL 334
            .|:|||||||||.:|..|||.|||||||||||.|:|.|:|||::||||||||::.:|.:||||||
Zfish   267 TVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAAL 331

  Fly   335 LEYAAVNYT------YWGKRAKKKIKKVKECCPGKIGKSE-RSETCSTTEDIIELQDVRMSPIPS 392
            |||||||:.      ::..|.|.:.::......|:.|.:| ::::.:.|           ...||
Zfish   332 LEYAAVNFVSRQYKEFFRLRRKLRQEQRNRAASGQAGAAETKNKSNNVT-----------GGTPS 385

  Fly   393 ---LRRGTYNATLDSIGTETMNLGKFPPSFRI-TRNYGTGHSQLRRRAQRGISTRPRMLHALKRG 453
               .|:.:..|..:.:.::..:|  :.|.|.| |...|.|          .:|....|...|..|
Zfish   386 RNAQRQCSACAREEQLASQNQDL--YFPGFGIDTSLSGDG----------PLSEAAAMFAGLPPG 438

  Fly   454 ASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
            .:........::....||..||.:||:|||.||:.||:.|
Zfish   439 HALFDIRRRFVEQAKRIDTISRAVFPLSFLVFNVFYWVTY 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 184/493 (37%)
Neur_chan_LBD 47..256 CDD:280998 85/221 (38%)
Neur_chan_memb 263..490 CDD:280999 89/237 (38%)
glra4bNP_001189440.1 LIC 5..478 CDD:273305 184/493 (37%)
Neur_chan_LBD 47..253 CDD:280998 85/220 (39%)
Neur_chan_memb 260..475 CDD:280999 89/237 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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