DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and lgc-35

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001022438.1 Gene:lgc-35 / 189960 WormBaseID:WBGene00012915 Length:515 Species:Caenorhabditis elegans


Alignment Length:498 Identity:132/498 - (26%)
Similarity:213/498 - (42%) Gaps:108/498 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LQLIRCIRKDVLAGRLENVTQTISNILQGYDIRLRPNFGGE-PLHVGMDLTIASFDAISEVNMDY 85
            ||.:|.|:                     ||.|..|:.|.: |:||.:.:.:::..::|||.|||
 Worm    76 LQFLRSIK---------------------YDHRQVPDDGYDGPVHVNVSIVVSNIRSVSEVTMDY 119

  Fly    86 TITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFAN---DKNSFLH 147
            :|.|:..:.|||.||.::  ...|.::.:      ::|...::..:|.||||..|   .||....
 Worm   120 SIEMFYRESWRDPRLTYS--RDKFKNKTE------ISLHESYSNYLWHPDTFVPNAISSKNPRRQ 176

  Fly   148 DVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTP 212
            .:|.|: |:||..:|::.|..|.:..|.|.|||..:|.|:|.|.:..||||||...|...|....
 Worm   177 SITHRS-LLRLRNNGSILYSRRLSLILTCGMDLTLFPFDTQLCKMGFESYGYTADKVKYLWSTGA 240

  Fly   213 VRGVE--DAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSW 275
            ::.::  ...||.|.:.......|.|..|||.|.||.:.|...|..|:...|..:||..:|:.||
 Worm   241 IQSLKLHKIRLPDFQVKEAYVTSRVESYATGDYSRLYVCFVFNRAAGFCFLQLIIPSTAVVITSW 305

  Fly   276 VSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAV 340
            ||.|:.:|.:...:   |:.:||:|.:.......:||:||:||:|:||.:||..||.:|::.|||
 Worm   306 VSLWMENETSFQDM---ISIILTITFLLFSYNEVMPRVSYIKAMDVYLGVCFCIVFLSLIKLAAV 367

  Fly   341 NYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSI 405
            .|.                         |.....|.:..|    |....:|.||      .::.|
 Worm   368 KYM-------------------------RQRLLITRDTSI----VAAGMLPMLR------LVNGI 397

  Fly   406 GTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALK---RGASAIKATIPKIKDV 467
            |:..:|              |:........|.:.:|..|.....::   .|:.:......:.||.
 Worm   398 GSPAVN--------------GSEGFTYENPAVKKVSMSPDTFTQVQMETNGSMSPVCRQNRAKDN 448

  Fly   468 NIIDKYS-----------------RMIFPISFLAFNLGYWLFY 493
            ..:.:.|                 :|.|...|:.|.|.|:|.|
 Worm   449 GNVSQSSNCFEFSPTFMHRFHWITQMTFFFGFVIFCLFYFLVY 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 131/496 (26%)
Neur_chan_LBD 47..256 CDD:280998 69/214 (32%)
Neur_chan_memb 263..490 CDD:280999 54/246 (22%)
lgc-35NP_001022438.1 LIC 83..491 CDD:273305 127/489 (26%)
Neur_chan_LBD 84..283 CDD:280998 68/207 (33%)
Neur_chan_memb 293..>370 CDD:280999 30/79 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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