Protein Alignment Lcch3 and lgc-47

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: NP_741878.1
• Gene: lgc-47 / 181193
• WormBaseID: WBGene00009799
• Length: 428
• Species: Caenorhabditis elegans
• Alignment Length: 497
• Identity: 125/497 - (25%)
• Similarity: 211/497 - (42%)
• Gaps: 118/497 - (23%)

  Fly    15 FFLLGAQLQLIRCIRKDV-------LAGRLENVTQTISNILQGYDIRLRPNFGGEP---LHVGMD 69
            |.||.|..:.:..:..::       |.....|.|:.|.::|  .|..|..|....|   :.|.::
 Worm    25 FLLLYATRETVNAMTAEISPTVSYLLDRGCANDTEIIDHLL--IDRALYYNKHKLPSPQVDVRIE 87

  Fly    70 LTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFA--EKIW 132
            :.:....::||:..|:.|.:|:|:||.|..||::|......:           ||.|:|  :.||
 Worm    88 MWVQEVTSVSELTQDFEIDLYMNEYWTDPGLAYDILNPCQGN-----------LSFDWAVMQNIW 141

  Fly   133 VPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESY 197
            .|:|.|.|.|.:.||.....|..:.:..:|:|....|..:|..|:|||..:|:||..||:..||:
 Worm   142 TPNTCFINSKKAQLHSSPFTNVFLMVFPNGSVWSNWRIKSTGPCVMDLTKFPMDSIECTLTFESF 206

  Fly   198 GYTVSDVVMYWKPTPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQ 262
            .|...:|.|.|...|:...:..|||.||:..:.|:::.:..|.|.:..|:::|..:|..|:::.|
 Worm   207 NYNKDEVFMRWGDPPLTIFKPIELPDFTMTNFSTSNKFQLYAAGYWSELNVNFLFRRRSGWYLLQ 271

  Fly   263 TYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCF 327
            .|:|:.:.|.:||:.|::..:|..||..:|:..:|.:|.....:..:|||:||:||||::::...
 Worm   272 GYIPTYMTVFISWIPFYLGPKAIPARTMIGVNALLALTFQFGNIIRNLPRVSYIKAIDVWMLSGI 336

  Fly   328 VFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPS 392
            .||||:|.|.|.:.:.
 Worm   337 CFVFASLFELATIGFL------------------------------------------------- 352

  Fly   393 LRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAI 457
            :|.....||..|..|:..|..:.|             |..|...||
 Worm   353 MRNEGKPATKSSRSTKNSNRWQQP-------------SVCREDTQR------------------- 385

  Fly   458 KATIPKIKDVNII-----DKYSRMIFPISFLAFNLGYWLFYI 494
                   |..||:     |..||::||:.|..:|..||..|:
 Worm   386 -------KSQNIVFCERLDNTSRLMFPVVFTFYNFIYWFVYM 420

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	124/494 (25%)
		Neur_chan_LBD	47..256	CDD:280998	63/213 (30%)
		Neur_chan_memb	263..490	CDD:280999	49/231 (21%)
lgc-47	NP_741878.1	Neur_chan_LBD	58..264	CDD:280998	64/218 (29%)
		LIC	59..419	CDD:273305	117/460 (25%)
		Neur_chan_memb	273..>352	CDD:280999	28/78 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910