DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabrr1

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_032101.3 Gene:Gabrr1 / 14408 MGIID:95625 Length:480 Species:Mus musculus


Alignment Length:453 Identity:178/453 - (39%)
Similarity:257/453 - (56%) Gaps:62/453 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
            :..:|..:||.|||..:.||:|:.:.|.|:||||:||:|:|:||..||:||||:|         .
Mouse    82 IDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSF---------P 137

  Fly   113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACM 177
            :.:.:|  :|..|...:||||||.||.:.|.||:||.|..|.::|:..||.|.|.:|.|.|..|.
Mouse   138 SSNNLS--MTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCN 200

  Fly   178 MDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKP--TPVRGVEDAELPQFTIIGYETNDRKERLA- 239
            ||...:|||:|.|::|||||.||..|:::|||.  ..::..|...|.||.|..:.|.   .:|| 
Mouse   201 MDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTT---TKLAF 262

  Fly   240 ---TGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTT 301
               ||.|.||.::|.|:|:|.:|:.|||.|:.|:||||||||||:..|..|||.|||||||||:|
Mouse   263 YSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMST 327

  Fly   302 ISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY-TYWGKRAKKKIKKVKECCPGKIG 365
            |.|||.:|:||:||:||:||||.:.|||||.::|||||||| |...:|.::|:::...|      
Mouse   328 IITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLREKISC------ 386

  Fly   366 KSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHS 430
                  ||...:....:.|...|          :..::.:|......|:.|....:.....:...
Mouse   387 ------TCGLPQPRGVMLDSSYS----------DGEVNDLGGYMPENGEKPDRMMVQLTLASERG 435

  Fly   431 QLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
            ..:|:.|||.....|:                   :.:.||||||:|||.:::.|||.||..:
Mouse   436 SPQRKGQRGSYVSMRI-------------------NTHAIDKYSRIIFPAAYILFNLIYWSIF 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 178/451 (39%)
Neur_chan_LBD 47..256 CDD:280998 89/213 (42%)
Neur_chan_memb 263..490 CDD:280999 84/227 (37%)
Gabrr1NP_032101.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..67
LIC 76..479 CDD:273305 178/451 (39%)
Neur_chan_LBD 77..282 CDD:280998 89/213 (42%)
Neur_chan_memb 289..476 CDD:280999 84/227 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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