DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabrg2

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_032099.1 Gene:Gabrg2 / 14406 MGIID:95623 Length:474 Species:Mus musculus


Alignment Length:472 Identity:167/472 - (35%)
Similarity:240/472 - (50%) Gaps:79/472 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 NVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFN 103
            :||..::|:|:|||.:|||:.|.:|..:..|:.:.|...::.:||:|||.::..|.|.|.||.||
Mouse    64 DVTVILNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 128

  Fly   104 IFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGM 168
                        ....||.|:.:...|||:|||||.|.|.:..|.:|..|:::|:..||.|.|.:
Mouse   129 ------------STIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTL 181

  Fly   169 RFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVEDA---ELPQFTIIGYE 230
            |.|....|.:.||.:|:|..:|.:|..||||...::|..||.:.|. |.|.   .|.||:.:|..
Mouse   182 RLTIDAECQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVE-VGDTRSWRLYQFSFVGLR 245

  Fly   231 TNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITT 295
            ......:..:|.|..:|:.|.|.|.:|||..|||:|..|||:|||||||||.:|..||.:|||||
Mouse   246 NTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITT 310

  Fly   296 VLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKR-AKKKIKKVKEC 359
            ||||||:||..|.|||::|||.|:|:::.:||:|||:||:||..::|....:: :|.|.||.|. 
Mouse   311 VLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDKDKKKKN- 374

  Fly   360 CPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNA-TLDSIGTETMNLGKFPPSFRITR 423
                                           |.||..::.| |:|.          .|.|..|..
Mouse   375 -------------------------------PLLRMFSFKAPTIDI----------RPRSATIQM 398

  Fly   424 NYGTGHSQLRRRAQRGISTRPR--------MLHALKRGA---SAIKATIPKIKDVNIIDKYSRMI 477
            |..| |.| .|..:.|......        .....:.||   ..|...|.|      :|.|:|:.
Mouse   399 NNAT-HLQ-ERDEEYGYECLDGKDCASFFCCFEDCRTGAWRHGRIHIRIAK------MDSYARIF 455

  Fly   478 FPISFLAFNLGYWLFYI 494
            ||.:|..|||.||:.|:
Mouse   456 FPTAFCLFNLVYWVSYL 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 166/469 (35%)
Neur_chan_LBD 47..256 CDD:280998 73/211 (35%)
Neur_chan_memb 263..490 CDD:280999 84/239 (35%)
Gabrg2NP_032099.1 LIC 68..471 CDD:273305 164/465 (35%)
Neur_chan_LBD 68..271 CDD:280998 74/215 (34%)
Neur_chan_memb 278..468 CDD:280999 84/239 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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