DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabrg1

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_034382.2 Gene:Gabrg1 / 14405 MGIID:103156 Length:465 Species:Mus musculus


Alignment Length:511 Identity:176/511 - (34%)
Similarity:251/511 - (49%) Gaps:99/511 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LFFFLLGAQLQLIRCIRKD--------------VLAGRLE--NVTQTISNILQGYDIRLRPNFGG 61
            |.|.||  .|.|..|:.|.              |||.::.  ::||.::::|||||.:|||:.|.
Mouse    23 LIFLLL--TLHLGNCVDKADDEDDEDLTMNKTWVLAPKIHEGDITQILNSLLQGYDNKLRPDIGV 85

  Fly    62 EPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGD 126
            .|..:..|:.:.|...:..:||:|||.:...|.|.|.||.||            ....||.|:.:
Mouse    86 RPTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRLKFN------------STMKVLMLNSN 138

  Fly   127 FAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCT 191
            ...|||:|||||.|.:.|..|.:|..|:|:|:..||.|.|.:|.|....|.:.||.:|:|..:|.
Mouse   139 MVGKIWIPDTFFRNSRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAECYLQLHNFPMDEHSCP 203

  Fly   192 VEIESYGYTVSDVVMYWKPTPVRGVEDAE---LPQFTIIGYETNDRKERLATGVYQRLSLSFKLQ 253
            :|..||||..:::...||...|. |.|.:   |.||..:|...:.......:|.|..:::.|.|.
Mouse   204 LEFSSYGYPKNEIEYKWKKPSVE-VADPKYWRLYQFAFVGLRNSTEISHTISGDYIIMTIFFDLS 267

  Fly   254 RNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKA 318
            |.:|||..|||:|.||.|:|||||||||.:|..||.:|||||||||||:||..|.|||::|||.|
Mouse   268 RRMGYFTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTA 332

  Fly   319 IDIYLVMCFVFVFAALLEYAAVNYTYWGKRAK----KKIKKVKECCPGKIGKSERSETCSTTEDI 379
            :|:::.:||:||||||:||..::|.....:.|    :|:|......||....|          .:
Mouse   333 MDLFVSVCFIFVFAALMEYGTLHYFTSNNKGKTTRGRKLKNKTSASPGLHAGS----------TL 387

  Fly   380 IELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRI------TRNYGTGHSQLRRRAQR 438
            |.:..:      ||.:|.     |..|.:.:. ||...||..      |.::..|...:|     
Mouse   388 IPMNSI------SLPQGE-----DDYGYQCLE-GKDCTSFFCCFDDCRTGSWREGRIHIR----- 435

  Fly   439 GISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
                                  |.|      ||.|||:.||.:|..|||.||:.|:
Mouse   436 ----------------------IAK------IDSYSRIFFPTAFALFNLVYWVGYL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 174/506 (34%)
Neur_chan_LBD 47..256 CDD:280998 73/211 (35%)
Neur_chan_memb 263..490 CDD:280999 83/236 (35%)
Gabrg1NP_034382.2 Neur_chan_LBD 65..270 CDD:280998 75/217 (35%)
LIC 66..462 CDD:273305 163/463 (35%)
Neur_chan_memb 277..459 CDD:280999 83/236 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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