Sequence 1: | NP_996469.1 | Gene: | Lcch3 / 32554 | FlyBaseID: | FBgn0010240 | Length: | 496 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006538609.2 | Gene: | Gabrd / 14403 | MGIID: | 95622 | Length: | 483 | Species: | Mus musculus |
Alignment Length: | 474 | Identity: | 181/474 - (38%) |
---|---|---|---|
Similarity: | 265/474 - (55%) | Gaps: | 63/474 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 31 DVLAGRLE-NVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQY 94
Fly 95 WRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLG 159
Fly 160 GDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPT--PVRGVEDAELP 222
Fly 223 QFTIIGYE-TNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATS 286
Fly 287 ARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTY-WGKRAK 350
Fly 351 KKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNA----TLDSIGTETMN 411
Fly 412 LGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRM 476
Fly 477 IFPISFLAFNLGYWLFYIL 495 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lcch3 | NP_996469.1 | LIC | 15..493 | CDD:273305 | 180/470 (38%) |
Neur_chan_LBD | 47..256 | CDD:280998 | 90/211 (43%) | ||
Neur_chan_memb | 263..490 | CDD:280999 | 82/231 (35%) | ||
Gabrd | XP_006538609.2 | LGIC_ECD | 97..280 | CDD:355788 | 83/194 (43%) |
Cys-loop | 198..212 | CDD:349787 | 9/13 (69%) | ||
LGIC_TM_GABAAR_delta | 283..>371 | CDD:349857 | 50/87 (57%) | ||
TM1 helix | 286..306 | CDD:349857 | 12/19 (63%) | ||
TM2 helix | 315..336 | CDD:349857 | 14/20 (70%) | ||
TM3 helix | 346..368 | CDD:349857 | 12/21 (57%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3644 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |