DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabra6

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_036012221.1 Gene:Gabra6 / 14399 MGIID:95618 Length:459 Species:Mus musculus


Alignment Length:387 Identity:149/387 - (38%)
Similarity:220/387 - (56%) Gaps:30/387 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LFFFLLGAQLQLIRCIRKDVLAGRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDA 77
            :..:|..||.||     :|......|||::.:.|:|:|||.||||.|||....|..|:.:.||..
Mouse    10 IILWLENAQAQL-----EDEGNFYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSFGP 69

  Fly    78 ISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDK 142
            :|:|.|:||:.::..|.|.||||.|.            |.:::|:|:.....|||.|||||.|.|
Mouse    70 VSDVEMEYTMDVFFRQTWTDERLKFK------------GPAEILSLNNLMVSKIWTPDTFFRNGK 122

  Fly   143 NSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMY 207
            .|..|::|..|||.||..:|.:.|.||.|....|.|.|..:|:|...|.::..||.|..::::..
Mouse   123 KSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKTEIIYT 187

  Fly   208 WKPTPVRGV----EDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSI 268
            ||..|:..|    |.:.|.|:.:||...:....:..||.|..:::.|.|||.:|||:.|.|.|.|
Mouse   188 WKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCI 252

  Fly   269 LIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAA 333
            :.|:||.||||||.|:..||...||||||||||:|...|.|||::||..|:|.::.:||.|||:|
Mouse   253 MTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSA 317

  Fly   334 LLEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRR 395
            |:|:||||| :...:::|..::.:......:.||:.||:       ::.:.|..:| |..||
Mouse   318 LIEFAAVNY-FTNLQSQKAERQAQTAATPPVAKSKASES-------LQAEIVVTAP-PQKRR 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 149/385 (39%)
Gabra6XP_036012221.1 LGIC_ECD_GABAAR_A6 42..239 CDD:349840 76/208 (37%)
Cys-loop 156..170 CDD:349840 5/13 (38%)
LGIC_TM_GABAAR_alpha 242..337 CDD:349854 51/95 (54%)
TM1 helix 242..265 CDD:349854 13/22 (59%)
TM2 helix 269..293 CDD:349854 14/23 (61%)
TM3 helix 301..327 CDD:349854 15/26 (58%)

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