DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and Gabra1

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_006532258.1 Gene:Gabra1 / 14394 MGIID:95613 Length:553 Species:Mus musculus


Alignment Length:479 Identity:170/479 - (35%)
Similarity:239/479 - (49%) Gaps:81/479 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 KDVLAGRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQY 94
            :|.|.......|:.:..:|.|||.||||..|.....|..|:.:.||..:|:.:|:|||.::..|.
Mouse   129 QDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQS 193

  Fly    95 WRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLG 159
            |:||||.|.            |...||.|:...|.|||.|||||.|.|.|..|::|..|||:|:.
Mouse   194 WKDERLKFK------------GPMTVLRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIT 246

  Fly   160 GDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVEDAE---- 220
            .||.:.|.||.|....|.|.|..:|:|:..|.::..||.||.::||..|...|.|.|..||    
Mouse   247 EDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREPARSVVVAEDGSR 311

  Fly   221 LPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEAT 285
            |.|:.::|...:....:.:||.|..::..|.|:|.|||||.|||||.|:.|:||.||||:|.|:.
Mouse   312 LNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESV 376

  Fly   286 SARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVN------YTY 344
            .||...|:||||||||:|...|:|||:::|..|:|.::.:|:.|||:||:|:|.||      |.:
Mouse   377 PARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAW 441

  Fly   345 WGKR-AKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRR-GTYNATLDSIGT 407
            .||. ..:|.||||:                                |.::: .||..|..|.  
Mouse   442 DGKSVVPEKPKKVKD--------------------------------PLIKKNNTYAPTATSY-- 472

  Fly   408 ETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPK--IKDVNII 470
             |.||.:..|          |.:.:.:.|    :..|      |......|...||  ...|:.|
Mouse   473 -TPNLARGDP----------GLATIAKSA----TIEP------KEVKPETKPPEPKKTFNSVSKI 516

  Fly   471 DKYSRMIFPISFLAFNLGYWLFYI 494
            |:.||:.||:.|..|||.||..|:
Mouse   517 DRLSRIAFPLLFGIFNLVYWATYL 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 169/476 (36%)
Neur_chan_LBD 47..256 CDD:280998 80/212 (38%)
Neur_chan_memb 263..490 CDD:280999 78/236 (33%)
Gabra1XP_006532258.1 LIC 105..539 CDD:273305 169/476 (36%)
LGIC_ECD_GABAAR_A1 153..346 CDD:349835 75/204 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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