DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and LOC100496398

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_002939256.1 Gene:LOC100496398 / 100496398 -ID:- Length:492 Species:Xenopus tropicalis


Alignment Length:497 Identity:240/497 - (48%)
Similarity:318/497 - (63%) Gaps:40/497 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LGAQLQ-----LIRCIRKDVLAGRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDA 77
            :||.|.     ||.|..:.:.:|.:..|.:|:..:|:||||||||:|||:|:.|||.:.|:|.|.
 Frog    15 IGASLSYLATLLIVCSAQSLPSGNISVVKKTVDKLLKGYDIRLRPDFGGDPVSVGMSIHISSIDQ 79

  Fly    78 ISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDK 142
            |||||||||||||..|.|||:|||:.            .:...|||....|:::|:|||:|.|||
 Frog    80 ISEVNMDYTITMYFQQSWRDKRLAYT------------ALPLNLTLDNRVADQLWLPDTYFLNDK 132

  Fly   143 NSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMY 207
            .||||.||.:|:::||..||.|.||:|.|||.||||||..||||.||||:||||||||:.|:..:
 Frog   133 KSFLHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDQQNCTLEIESYGYTIDDIKFF 197

  Fly   208 W---KPTPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSIL 269
            |   :...|.||...||||||||......:.....||.|.||||||:::||||||:.|||:||||
 Frog   198 WQGGEEAAVTGVSALELPQFTIIETRLVSKNVVFTTGSYPRLSLSFRIKRNIGYFILQTYMPSIL 262

  Fly   270 IVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAAL 334
            |.:|||||||||::|::||||||:|||||||||:|.:|.:||:|.||||||:||:.||||||.||
 Frog   263 ITILSWVSFWINYDASAARVALGVTTVLTMTTINTHLRETLPKIPYVKAIDVYLMGCFVFVFLAL 327

  Fly   335 LEYAAVNYTYWGKRAKKKIKKVKECCPGKIGKSERSETCSTTEDI-----IELQDVRM-SPIPSL 393
            ||||.|||.::| |..::.||:.|.......:..|.|.....|.:     |.|..:.| |.:.|.
 Frog   328 LEYAFVNYVFFG-RGPQQQKKLNERTNKANNERHRYEERRVREQVDPYGNILLSTLDMSSELMSA 391

  Fly   394 RRGTYNATLDSIGTETMNLGKFPPS---FR---ITRNYGTGHSQLRRRAQRGISTRPRMLHALKR 452
            ..|:      |:|....::..:..|   ||   .:|..|.||:.|.|.... .:.|.|....|:|
 Frog   392 EMGS------SVGDSRNSVLSYDTSGIQFRKQLTSRGDGFGHTPLERHVPM-TAARGRANCRLRR 449

  Fly   453 GASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
            .:|.:|..||.:.||:.|||:||:||||:|..|||.||::|:
 Frog   450 RSSKLKLKIPDLTDVSTIDKWSRIIFPITFGFFNLVYWMYYV 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 239/494 (48%)
Neur_chan_LBD 47..256 CDD:280998 114/211 (54%)
Neur_chan_memb 263..490 CDD:280999 108/238 (45%)
LOC100496398XP_002939256.1 LIC 15..490 CDD:273305 239/494 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 246 1.000 Domainoid score I2127
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 439 1.000 Inparanoid score I1627
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 1 1.000 - - FOG0001081
OrthoInspector 1 1.000 - - otm48038
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X650
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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