DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and gabrb1

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_012811146.2 Gene:gabrb1 / 100489344 XenbaseID:XB-GENE-6049110 Length:477 Species:Xenopus tropicalis


Alignment Length:497 Identity:238/497 - (47%)
Similarity:319/497 - (64%) Gaps:42/497 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GLFFFL-LGAQLQLIRCIRKDVLAGRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASF 75
            |.|..| |...:.::.|.:.......:..|.:|:..:|:||||||||:|||..:.|||.:.:||.
 Frog     8 GYFGMLSLPVMIAMVCCAQSVNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPSVEVGMRIDVASI 72

  Fly    76 DAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFAN 140
            |.:||||||||:|||..|.|||:||:::            ||...|||....|:::|||||:|.|
 Frog    73 DMVSEVNMDYTLTMYFQQSWRDKRLSYS------------GIPLNLTLDNRVADQLWVPDTYFLN 125

  Fly   141 DKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVV 205
            ||.||:|.||.:|:::||..||.|.||:|.|||.||||||..||||.||||:||||||||..|:.
 Frog   126 DKRSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIK 190

  Fly   206 MYWK--PTPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSI 268
            .||.  ...:.|||..|||||:||.|:...|....:||.|.||||||:|:||||||:.|||:||.
 Frog   191 FYWNGGDKAITGVEKIELPQFSIIDYKMVSRNVIFSTGAYPRLSLSFRLKRNIGYFILQTYMPST 255

  Fly   269 LIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAA 333
            ||.:|||||||||::|::||||||||||||||||||.:|.:||:|.|||||||||:.||||||.|
 Frog   256 LITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLA 320

  Fly   334 LLEYAAVNYTYWGK--RAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRG 396
            |||||.|||.::||  :.:||             .:|::|..:..:..:|:..|::....::...
 Frog   321 LLEYAFVNYIFFGKGPQLQKK-------------AAEKAEKANNEKTKLEMNKVQVDAHGNILLT 372

  Fly   397 TYNATLDSIGTETMNLGKFPPSFRITR-NYGTGHSQLRRR-AQRGISTRP----RMLH---ALKR 452
            |.....:..|:|.:.....|   |.|. :|.:...|.|:. |.|.:.:|.    .::|   .|:|
 Frog   373 TLELRNEVSGSEVLTSISDP---RATMFSYDSASIQYRKPVANRDMYSRSTLDRHVVHKKGRLRR 434

  Fly   453 GASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYI 494
            .||.||..||.:.|||.||::||||||::|..||:.|||:||
 Frog   435 RASQIKIKIPDLTDVNGIDRWSRMIFPVAFAFFNVVYWLYYI 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 234/491 (48%)
Neur_chan_LBD 47..256 CDD:280998 115/210 (55%)
Neur_chan_memb 263..490 CDD:280999 105/237 (44%)
gabrb1XP_012811146.2 LIC 9..475 CDD:273305 235/493 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 246 1.000 Domainoid score I2127
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 439 1.000 Inparanoid score I1627
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 1 1.000 - - FOG0001081
OrthoInspector 1 1.000 - - otm48038
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X650
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.970

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