Protein Alignment Lcch3 and gabrd

DIOPT Version :9

• Sequence 1: NP_996469.1
• Gene: Lcch3 / 32554
• FlyBaseID: FBgn0010240
• Length: 496
• Species: Drosophila melanogaster
• Sequence 2: XP_017951272.2
• Gene: gabrd / 100488161
• XenbaseID: XB-GENE-988598
• Length: 450
• Species: Xenopus tropicalis
• Alignment Length: 504
• Identity: 185/504 - (36%)
• Similarity: 270/504 - (53%)
• Gaps: 85/504 - (16%)

  Fly    16 FLLGAQLQLIRCIRKDVLAGRLENVTQTI-SNI-----------LQGYDIRLRPNFGGEPLHVGM 68
            ||.|..:.......:|  .|..|::.:.| |||           ::||....||..||.|:.|.:
 Frog     4 FLEGCMMAAFPLALED--RGHSEDIGEFIGSNIEISWVPNLDDLMKGYARNFRPGIGGAPVIVAV 66

  Fly    69 DLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWV 133
            |:.:.|.|.||||||:||:|::|:|.||||||::|            ..:..|.|...|.||:|:
 Frog    67 DVEVTSIDHISEVNMEYTMTVFLHQSWRDERLSYN------------HTNKTLGLDSRFVEKLWL 119

  Fly   134 PDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYG 198
            ||||..|.|:::.||||..|||:||..||.:.|..|.|:|::|.|||..||:|.|.|.:|:||||
 Frog   120 PDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSSRITSTVSCDMDLTKYPMDEQECMLELESYG 184

  Fly   199 YTVSDVVMYWKPTPVR--GVEDAELPQFTIIGYE-TNDRKERLATGVYQRLSLSFKLQRNIGYFV 260
            |:..|::..|.....:  |::..||.|||:..|. |.:.....:.|.:.||||.|.|:||.|.::
 Frog   185 YSSEDILYRWSENQEKNHGLDKIELAQFTVTNYRFTKNEMILKSAGEFPRLSLHFHLRRNRGVYI 249

  Fly   261 FQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVM 325
            .::|:||||:|.:|||||||:..|..|||:|||||||||||:....|:||||.|.|||:|:|.::
 Frog   250 IESYVPSILLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVSARTSLPRASAVKALDVYFLI 314

  Fly   326 CFVFVFAALLEYAAVNYT--YWGK-----RAKKKIKKVKECCPGKIGKSERSETCSTTEDIIELQ 383
            |:|||||||:|||..:|:  |..|     :|.||.|:|:
 Frog   315 CYVFVFAALVEYAFAHYSADYIKKEKVKTKASKKNKQVQ-------------------------- 353

  Fly   384 DVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRITRNYGTGHSQLR----RRAQRGISTRP 444
                     :..|.|...|.|:..    ||.......|.:::....::.|    |:.:..|...|
 Frog   354 ---------MNEGQYAIVLLSLSI----LGMDQSLTLINKHHFATQNEARLEGMRKDKLQICRDP 405

  Fly   445 RMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFY 493
            :     ....|.:|:.:..| :.:.||.|:|.:||.:|.|.|:.||:.|
 Frog   406 K-----PEKESRLKSLLRPI-EADSIDVYARAVFPAAFAAVNIIYWVAY 448

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lcch3	NP_996469.1	LIC	15..493	CDD:273305	184/502 (37%)
		Neur_chan_LBD	47..256	CDD:280998	90/222 (41%)
		Neur_chan_memb	263..490	CDD:280999	81/237 (34%)
gabrd	XP_017951272.2	LIC	42..448	CDD:273305	174/462 (38%)
		LGIC_ECD	61..244	CDD:355788	82/194 (42%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D226476at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.020