DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and gabrr3

DIOPT Version :10

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_017947352.2 Gene:gabrr3 / 100487991 XenbaseID:XB-GENE-6039478 Length:481 Species:Xenopus tropicalis


Alignment Length:458 Identity:178/458 - (38%)
Similarity:264/458 - (57%) Gaps:70/458 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDE 112
            :..:|..:||.|||..:.||:|:.|.|.|:||||:||:|:|:||..||:||||:|         :
 Frog    83 IDDHDFAMRPGFGGSAIPVGIDVQIESIDSISEVDMDFTMTLYLRHYWKDERLSF---------Q 138

  Fly   113 NDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACM 177
            :.:..|  :|..|...:||||||.||.:.|.||:||.|..|.::|:..||.|.:.:|.|.|..|.
 Frog   139 STNNRS--MTFDGRLIKKIWVPDVFFVHSKRSFIHDTTMENIMLRVYPDGNVLFSLRITVTAMCF 201

  Fly   178 MDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVEDAE------LPQFTIIGYE-TNDRK 235
            ||...:|||:|||::|:|||.|...|:::|||    ||.|..:      |.||.|..:. :|...
 Frog   202 MDFSRFPLDTQNCSLELESYAYNEEDLMLYWK----RGNESLKTDEHIALSQFFIEEFSASNGLA 262

  Fly   236 ERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMT 300
            ...:||.|.||.::|.|:|:|.:|:.|:|.|::|:||||||||||:..|..|||:|||||||||:
 Frog   263 FYSSTGWYNRLFINFILRRHIFFFLLQSYFPAMLMVMLSWVSFWIDRRAVPARVSLGITTVLTMS 327

  Fly   301 TISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGKIG 365
            ||.|||.:|:|::||:||:|:||.:.|:|||.:::|||||||                       
 Frog   328 TIITGVSASMPQVSYIKAVDVYLWISFLFVFLSVIEYAAVNY----------------------- 369

  Fly   366 KSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNL-GKFPPSFRITRNYGTGH 429
                   .:|.|:..:|:          |||..:|||:....:.|.. |.|..| ....|:.. |
 Frog   370 -------LTTAEERKQLK----------RRGKSSATLNLEAVQAMAFDGCFHDS-DADLNFSM-H 415

  Fly   430 SQLRRRAQRGISTRPRMLHALK-RGASAIKATIPKI--KDVNIIDKYSRMIFPISFLAFNLGYWL 491
            |:  ..:.||.:.....|.|:: |...:|:....:|  ::.::||.|||:|||..::.||..||.
 Frog   416 SE--ESSSRGRAASVATLDAMRVRRKKSIRGNFGRIILENNHVIDTYSRIIFPTVYIVFNFFYWG 478

  Fly   492 FYI 494
            .|:
 Frog   479 AYL 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 177/455 (39%)
gabrr3XP_017947352.2 LIC 77..480 CDD:455710 177/455 (39%)
LGIC_ECD 98..283 CDD:475126 82/199 (41%)

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