DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and gabrb1

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_002664179.2 Gene:gabrb1 / 100331377 ZFINID:ZDB-GENE-090313-230 Length:484 Species:Danio rerio


Alignment Length:471 Identity:240/471 - (50%)
Similarity:305/471 - (64%) Gaps:48/471 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 VTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERLAFNI 104
            |..|:..:|:||||||||:|||.|:.|||.:.|:|.|.:||||||||||||..|.|||:||::. 
Zfish    45 VKVTVDKLLKGYDIRLRPDFGGPPVDVGMSIDISSIDMVSEVNMDYTITMYFQQSWRDKRLSYT- 108

  Fly   105 FGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGMR 169
                       ||...|||....|:::|||||:|.|||.||:|.||.:|:::||..||.|.||:|
Zfish   109 -----------GIPLNLTLDNRVADQLWVPDTYFINDKKSFVHGVTVKNRMIRLHPDGTVLYGLR 162

  Fly   170 FTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWK-PTPVRGVEDAELPQFTIIGYETND 233
            .|||.||||||..||||.||||:||||||||..|:..||: .:.|.||::.|||||:||.|:|..
Zfish   163 ITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWQGGSSVTGVDNIELPQFSIIDYKTLS 227

  Fly   234 RKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLT 298
            :|...|||.|.||||||||:||||||:.|||:||.||.:|||||||||::|::||||||||||||
Zfish   228 KKVVFATGSYPRLSLSFKLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLT 292

  Fly   299 MTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVKECCPGK 363
            ||||:|.:|.:||:|.|||||||||:.||||||.||||||.|||.::| |.....|||.|.....
Zfish   293 MTTINTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFG-RGPHLQKKVAEKAAKS 356

  Fly   364 IGKSERSETCSTTEDI---IELQ--DVRMSPIPSL-RRGTYNATLDSIGTETMNLGKFP------ 416
            ..:..|.|:.....|:   |.|.  |:|:|....| ..|....|:.|..:.::...| |      
Zfish   357 NNEKSRLESNKVQVDVHGSIPLTNLDLRLSGAEMLGALGDPRNTMFSYDSASIQYRK-PLTGRDL 420

  Fly   417 ---PSFRITRNYGTGHSQLRRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIF 478
               |:..|.|......|:||||                  |:.:|..||.:.|||.|||:||:||
Zfish   421 YGRPTASIERPLAPKKSRLRRR------------------AAQLKVKIPDLTDVNAIDKWSRVIF 467

  Fly   479 PISFLAFNLGYWLFYI 494
            ||::..|||.|||:|:
Zfish   468 PITYTFFNLVYWLYYV 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 239/468 (51%)
Neur_chan_LBD 47..256 CDD:280998 120/209 (57%)
Neur_chan_memb 263..490 CDD:280999 108/241 (45%)
gabrb1XP_002664179.2 LIC 19..482 CDD:273305 239/468 (51%)
Neur_chan_LBD 49..250 CDD:280998 120/212 (57%)
Neur_chan_memb 257..479 CDD:280999 108/241 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 251 1.000 Domainoid score I2057
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 433 1.000 Inparanoid score I1673
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 1 1.000 - - FOG0001081
OrthoInspector 1 1.000 - - otm25145
orthoMCL 1 0.900 - - OOG6_101786
Panther 1 1.100 - - LDO PTHR18945
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2537
SonicParanoid 1 1.000 - - X650
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.860

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