DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lcch3 and gabrb3

DIOPT Version :9

Sequence 1:NP_996469.1 Gene:Lcch3 / 32554 FlyBaseID:FBgn0010240 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001096164.1 Gene:gabrb3 / 100124708 XenbaseID:XB-GENE-6030743 Length:475 Species:Xenopus tropicalis


Alignment Length:463 Identity:236/463 - (50%)
Similarity:307/463 - (66%) Gaps:23/463 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDER 99
            |.:..|.:|:..:|:||||||||:|||.|:.|||::.|||.|.:||||||||:|||..|||||:|
 Frog    32 GNMSFVKETVDKLLKGYDIRLRPDFGGSPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKR 96

  Fly   100 LAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAV 164
            ||:.            ||...|||....|:::|||||:|.|||.||:|.||.:|:::||..||.|
 Frog    97 LAYT------------GIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTV 149

  Fly   165 TYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYW--KPTPVRGVEDAELPQFTII 227
            .||:|.|||.||||||..||||.||||:||||||||..|:..||  ....|.|||..|||||:|:
 Frog   150 LYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWLGGDNAVTGVERIELPQFSIM 214

  Fly   228 GYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALG 292
            .::...:....|||.|.||||||||:||||||:.|||:|||||.:|||||||||::|::||||||
 Frog   215 DHKLVSKNVVFATGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALG 279

  Fly   293 ITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAKKKIKKVK 357
            ||||||||||:|.:|.:||:|.||||||:||:.||||||.||||||.|||.::| |..:..||:.
 Frog   280 ITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFG-RGPQMQKKLA 343

  Fly   358 ECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNATLDSIGTETMNLGKFPPSFRIT 422
            |    |..||.:..:...:..:....::.::.:......|.|....|:.....:...|..|....
 Frog   344 E----KSAKSNKDHSKFESNRVDAHGNILLTTLEIHNEVTGNEITTSVSDARNSATSFDNSGIQY 404

  Fly   423 RNYGTGHSQL-RRRAQRGISTRPRMLHALKRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFN 486
            |...|....| ||.|.|  :..|:..| |:|.:|.:|..||.:.|||.||::||::|||:|..||
 Frog   405 RKQSTARDSLGRRTADR--NHPPKKTH-LRRRSSQLKIKIPDLTDVNAIDRWSRIVFPITFSLFN 466

  Fly   487 LGYWLFYI 494
            |.|||:||
 Frog   467 LIYWLYYI 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lcch3NP_996469.1 LIC 15..493 CDD:273305 234/460 (51%)
Neur_chan_LBD 47..256 CDD:280998 119/210 (57%)
Neur_chan_memb 263..490 CDD:280999 103/227 (45%)
gabrb3NP_001096164.1 LIC 11..473 CDD:273305 234/460 (51%)
Neur_chan_LBD 41..243 CDD:280998 119/213 (56%)
Neur_chan_memb 250..470 CDD:280999 103/227 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 246 1.000 Domainoid score I2127
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H633
Inparanoid 1 1.050 439 1.000 Inparanoid score I1627
OMA 1 1.010 - - QHG47165
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 1 1.000 - - FOG0001081
OrthoInspector 1 1.000 - - otm48038
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2537
SonicParanoid 1 1.000 - - X650
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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