DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and glrb

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001072255.1 Gene:glrb / 779708 XenbaseID:XB-GENE-1011734 Length:497 Species:Xenopus tropicalis


Alignment Length:548 Identity:155/548 - (28%)
Similarity:260/548 - (47%) Gaps:87/548 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 SKPKTN--GSLKRSQNATNLSYSSSEISNQRRVRRKAAADMLSRNISMILENLLKRYEQSQLPTH 127
            ||.|::  |..|:.|.......|:.:::   ||...:.:::|:|        ||..|:....|..
 Frog    22 SKEKSSKKGKGKKKQYLCPSQLSAEDLA---RVPANSTSNILNR--------LLVSYDPRVRPNF 75

  Fly   128 GQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRL----SFKGPIKSLSLSIKMLDKI 188
             :|:|..|..||.|.|.|.:.|..|||.::.:.||.|.|.||    .|:|. .:|::...|...:
 Frog    76 -KGIPVDVVVNIFINSFGSIQETTMDYRVNIFLRQRWNDPRLKLPNDFRGS-DALTVDPTMFKCL 138

  Fly   189 WRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGS 253
            |:||.:|.|.|::..|.:|..|.||.:.::|.:|.||||:|..:||::|..||||.|.|.:.:.|
 Frog   139 WKPDLFFANEKNANFHDVTQENILLFIFRDGDVLLSMRLSITLSCPLDLTLFPMDTQRCKMQLES 203

  Fly   254 YGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLIS--MMHRNFTT-VRREGDFSVLHVAFNLKRHT 315
            :||....|.:.|::.|...  :..:.|.|||:.:  :.:.|.|. .:..|.::.:.|.|.|:|..
 Frog   204 FGYTTDDLRFIWQSGDPVQ--MEKIALPQFDIKTEDIEYGNCTKYYKGTGYYTCVEVIFTLRRQV 266

  Fly   316 GYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDW 380
            |::::.||.|.:|||||||:||||:.:|::.||.|.:.|||:|::.......:||||.|..|:|.
 Frog   267 GFYMMGVYAPTLLIVVLSWLSFWINPDASAARVPLGIFSVLSLASECTTLAQELPKVSYVKAIDV 331

  Fly   381 FLLMSFLYCIATLLEFAGVHYFTKLGSGESP-QLEDQWEDICIANSLSDHAGEVDGDGEADADPF 444
            :|:...|:..|:|:|:|.|....     .|| ::|.:...|.       .|.:.:|.| |:|   
 Frog   332 WLIACLLFGFASLVEYAVVQVLL-----NSPKRIEAEKAKIA-------KAEQAEGKG-ANA--- 380

  Fly   445 ADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTY 509
            |.:::.||:....:.:...........||. :|:|....::      |:.|:             
 Frog   381 AKKNTVNGTGTPIHISTLQVGENRCKKVCT-SKSDLRSNDF------SIVGS------------- 425

  Fly   510 NDPSYILPNTMERTTQTEPPAVSRLHQMWMC----LKSDNSFRKQRERNAAAQKSEQGGANCYVN 570
                  ||...|.:.             :.|    ::.:|...|.:.:|   .|..........:
 Frog   426 ------LPRDFELSN-------------YDCYGKPIEVNNGLGKSQAKN---NKKPPPAKPVIPS 468

  Fly   571 SVSLIDRVARIAFPMSFAFLNLLYWWAY 598
            ....||..:|..||..|.|.|::||..|
 Frog   469 EAKRIDLYSRALFPFCFLFFNVIYWLVY 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 147/517 (28%)
Neur_chan_LBD 111..315 CDD:280998 70/210 (33%)
Neur_chan_memb 322..>403 CDD:280999 36/80 (45%)
glrbNP_001072255.1 LIC 38..496 CDD:273305 148/530 (28%)
LGIC_ECD_GlyR_beta 79..265 CDD:349811 64/188 (34%)
Cys-loop 183..197 CDD:349811 8/13 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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