DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8916 and gabrg2

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_031754595.1 Gene:gabrg2 / 779514 XenbaseID:XB-GENE-5949005 Length:505 Species:Xenopus tropicalis


Alignment Length:569 Identity:176/569 - (30%)
Similarity:263/569 - (46%) Gaps:130/569 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 KTNGSLK--RSQNATNLSYSSSEISNQRRVRR-------------KAAAD----------MLSR- 106
            :|.|.::  :..|:.|.:.|:|...:::.:.|             |...|          :|:| 
 Frog    26 ETRGEMRSPKKPNSGNDALSASAFCHRKMIVRVLLILSFIQCSFQKDDEDYEDAPSNNTWLLTRK 90

  Fly   107 ----NISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDK 167
                :::.||..|||.|:....|..|. .|||:.|::.:.|:|||:.::|:|::|.:|.|.|.|:
 Frog    91 FHDNDVTSILNGLLKGYDNKLRPDIGV-KPTVIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDR 154

  Fly   168 RLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKAT 232
            ||.|...||.|.|:..|:.|||.|||:|.|.|.:..|.||.||::||:..:|.:||::||||.|.
 Frog   155 RLKFNSTIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE 219

  Fly   233 CPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVR 297
            |.::|.|||||..||||...||||..:::||:||.....|..|....|.||..:.:.:.......
 Frog   220 CQLQLHNFPMDEHSCPLEFSSYGYPKEEIIYQWKRSSVEVGDVRSWRLYQFSFVGLRNTTEEVKT 284

  Fly   298 REGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTIS 362
            ..||:.|:.|.|:|.|..|||.||.|:||.||||||||||||:::|...|.||.:|:|||::|:|
 Frog   285 TSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLS 349

  Fly   363 LDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQ--------WED 419
            ..:|..||||.|.||:|.|:.:.|::..|.|:|:..:|||.   |...|..:.:        |  
 Frog   350 TIARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFV---SNRKPSKDKEKKKKNPLLW-- 409

  Fly   420 ICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLE 484
                 ..|..|            |..|....:.:...:|.....|..|.....|:..|:.|    
 Frog   410 -----MFSFKA------------PTIDIRPRSATIQMNNATHLQERDEEYGYECLDGKDCA---- 453

  Fly   485 YEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRK 549
                              :.|| .:.|            .:|......|:|              
 Frog   454 ------------------SFFC-CFED------------CRTGAWRHGRIH-------------- 473

  Fly   550 QRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
                                ..|:.||..:||.||.:|...||:||.:|
 Frog   474 --------------------IRVAKIDSYSRIFFPTAFCLFNLVYWVSY 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 169/541 (31%)
Neur_chan_LBD 111..315 CDD:280998 86/203 (42%)
Neur_chan_memb 322..>403 CDD:280999 41/80 (51%)
gabrg2XP_031754595.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 203 1.000 Domainoid score I2891
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm49077
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.020

Return to query results.
Submit another query.