DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and Gabrq

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_065234.1 Gene:Gabrq / 57249 MGIID:1888498 Length:638 Species:Mus musculus


Alignment Length:647 Identity:163/647 - (25%)
Similarity:287/647 - (44%) Gaps:142/647 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 PSSKPKTNGSLKRSQNATNLS-YSSSEISNQRRVRRKAAADMLSRNISMILENLLKRYEQSQLPT 126
            ||..||.:..|..|.....|. ::....:|:..|::             ||:.:|..|:....|.
Mouse    26 PSPTPKFHFELSSSTPEVILDLFNCKNCANEAVVQK-------------ILDRVLSTYDVRLRPN 77

  Fly   127 HGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFKGPIKSLSLSIKMLDKIWRP 191
            .| |.|..|..:|.:.|:..:||::|||::..:..|.|:|.||::.....:|:|..:|.:|:|.|
Mouse    78 FG-GAPVPVSVSIYVSSIEQISEINMDYTITMFLHQTWKDTRLAYYETNLNLTLDYRMHEKLWVP 141

  Fly   192 DTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGY 256
            |.||.|.|.:.:|.:||.|::.:|..:|.:.|.:|||..|.|.::||.||||:|||.|.:.||||
Mouse   142 DCYFVNSKDAFVHDVTVENRVFQLHPDGTVRYGIRLTTTAACSLDLQKFPMDKQSCKLEVESYGY 206

  Fly   257 INQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRRE-----GDFSVLHVAFNLKRHTG 316
            ..:.::..|:: |:|:....|:.:.|:..:..     |...:|     |.:..|.|.|.::|...
Mouse   207 TVEDIVLSWED-DNAIHITDGLHIPQYTYLGR-----TITSKEVYFYTGSYMRLIVKFQVQREVR 265

  Fly   317 YFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWF 381
            .:|:|||.|.:|..:|||:|||::.::::.||::.:||:|.|:||....|..||.:....|:|.:
Mouse   266 SYLVQVYWPTVLTTILSWISFWMNYDSSAARVTIGLTSILVLTTIDSHMRDKLPHISCIKAIDIY 330

  Fly   382 LLMSFLYCIATLLEFAGVHYFTKLGSGESPQLED-------------QWEDICIANSLSDHAGEV 433
            :|:...:...:|||:..::|   |...:.|:...             :::::.:|| :.|....|
Mouse   331 ILVCLFFVFLSLLEYVYINY---LFFSQVPRRNHRRCRKPRRVVARYRYQEVVVAN-VQDGLINV 391

  Fly   434 DGDGEADADPFAD--------EDSSNGS---ENDDNEAGASESVE-------------------- 467
            :...|..|.|..|        ...|.||   .::..:...|||:.                    
Mouse   392 EDRVEDRAGPLPDSPMQAHLASQESLGSLVFTSEQAQLATSESLSLLSSASSQTQLATGESLSDL 456

  Fly   468 ---SKSGVCVCN-------KNDAL-------------------GLEYEVSLQNSLAGAGFLK--- 500
               |:..|..|.       .||::                   .|..|.|..:..:..|.||   
Mouse   457 PSTSEQTVPECTIHFHGFLTNDSIIPIKIHSRSDACDDEDSEESLSSEESHGHGSSHTGRLKLQI 521

  Fly   501 -RNAIFCPTYN-DPSYILPNTMERTT-------QTEPPAVSRLHQMWMCLKSDNSFRKQRERNAA 556
             :..:...::: |...||.:.:..|:       |.:..|.|    :| .|..:......:|::::
Mouse   522 SQRCVQEASWDLDKIEILQDDISITSSWLGLDEQCKGDADS----IW-SLTDEELMACDQEKDSS 581

  Fly   557 AQKSEQGGANC-----------------YVNSVSLIDRVARIAFPMSFAFLNLLYWWAYGMY 601
            ::..|    ||                 ..|.|..:||.:|..||:||...|::| |.|.:|
Mouse   582 SESEE----NCSPSPGCSFNEGFSFQLFKPNRVPKVDRWSRFLFPLSFGLFNVVY-WLYHVY 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 153/612 (25%)
Neur_chan_LBD 111..315 CDD:280998 70/208 (34%)
Neur_chan_memb 322..>403 CDD:280999 28/80 (35%)
GabrqNP_065234.1 LGIC_ECD_GABAAR_theta 82..263 CDD:349804 62/186 (33%)
Cys-loop 183..197 CDD:349804 8/13 (62%)
LGIC_TM_GABAAR_theta 266..365 CDD:349858 32/101 (32%)
TM1 helix 266..289 CDD:349858 12/22 (55%)
TM2 helix 293..317 CDD:349858 9/23 (39%)
TM3 helix 325..351 CDD:349858 7/28 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 491..515 3/23 (13%)
LGIC_TM <604..636 CDD:365787 12/32 (38%)
TM4 helix 612..633 CDD:349850 9/21 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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