DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and gabrr2b

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_697486.2 Gene:gabrr2b / 569032 ZFINID:ZDB-GENE-041014-174 Length:464 Species:Danio rerio


Alignment Length:483 Identity:146/483 - (30%)
Similarity:230/483 - (47%) Gaps:105/483 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 GQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFKGP-IKSLSLSIKMLDKIWRP 191
            |..||  |..::.:.|:..:||:|||::|..|.|.||:|:||||... .||::...:::.|||.|
Zfish    74 GPAVP--VGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSKHNKSMTFDGRLVKKIWVP 136

  Fly   192 DTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGY 256
            |.:|.:.|.|.||..|..|.::|:..:|.:|||:|:|:.:.|.|:...||:|.|:|.|.:.||.|
Zfish   137 DVFFVHSKRSFIHDTTTENIMIRVYPDGHVLYSLRVTVTSACNMDFSRFPLDTQTCTLELESYAY 201

  Fly   257 INQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVR-----REGDFSVLHVAFNLKRHTG 316
            .::.|:..||:.|:::|....::|:|| ||...|   ||.|     ..|.::.|::.|.|:||..
Zfish   202 TDEDLMLYWKSGDESLSTDDKISLSQF-LIQKFH---TTSRLAFYSSTGWYNRLYINFTLRRHIF 262

  Fly   317 YFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWF 381
            :||:|.|.|..|:|:||||||||.|.|...||||.:|:|||:|||.......:|:|.|..|:|.:
Zfish   263 FFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITGVNASMPRVSYIKAVDIY 327

  Fly   382 LLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQ-WEDICIANS-----LSDHAGEVDGDGEAD 440
            |.:||::...::||:|.|:|.|.:..|...:|..: ....|..:|     |::..|..|.:|.|.
Zfish   328 LWVSFVFVFLSVLEYAAVNYLTTVHDGTDRKLRQKTLPGTCDISSMRTMMLNEAYGRPDSNGLAG 392

  Fly   441 ADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIF 505
                          .......:.|..|.:..:.||.   ::|.|.:.:.:.:|.|.         
Zfish   393 --------------YTQTTVSSEEPAEKQDPIAVCL---SIGPEVKGAKKRTLRGL--------- 431

  Fly   506 CPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVN 570
                    .|:.||                                                   
Zfish   432 --------RIIQNT--------------------------------------------------- 437

  Fly   571 SVSLIDRVARIAFPMSFAFLNLLYWWAY 598
              ..||..:|:.||.:|.|.||:||..|
Zfish   438 --HAIDAYSRMIFPGAFIFFNLIYWSVY 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 145/481 (30%)
Neur_chan_LBD 111..315 CDD:280998 71/192 (37%)
Neur_chan_memb 322..>403 CDD:280999 38/80 (48%)
gabrr2bXP_697486.2 LIC 55..463 CDD:273305 145/481 (30%)
Neur_chan_LBD 56..261 CDD:280998 71/192 (37%)
Neur_chan_memb 268..460 CDD:280999 68/278 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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