DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and gabra4

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001017822.1 Gene:gabra4 / 550520 ZFINID:ZDB-GENE-050417-360 Length:557 Species:Danio rerio


Alignment Length:540 Identity:194/540 - (35%)
Similarity:281/540 - (52%) Gaps:56/540 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 ISNQRRVRRKAAADMLSRNISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMD 153
            ||.|.|...|    :...|.:.||:.||..|:....|..| |..|.|:|:|.:.|.||||:::|:
Zfish    33 ISGQIRKDEK----LYPENFTRILDRLLDGYDNRLRPGFG-GPVTEVKTDIYVTSFGPVSDVEME 92

  Fly   154 YSMDCYFRQYWRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQN 218
            |:||.:|||.|.|:||.::||::.|.|:..|:.|:|.|||:|.|||.|..|.:|.||:|.|:.:|
Zfish    93 YTMDVFFRQTWVDRRLRYEGPVEILRLNNLMVTKVWTPDTFFRNGKRSVAHNMTAPNRLFRIMKN 157

  Fly   219 GGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEW-KNQDDAVSFVP-GMTLN 281
            |.|||:|||||.|.|||.|.|||||..||||..|||.|...::||.| |....:|...| ..:|.
Zfish   158 GTILYTMRLTISAECPMRLVNFPMDGHSCPLKFGSYAYPKTEMIYTWTKGPQHSVEVPPESSSLV 222

  Fly   282 QFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSD 346
            |:|||.....:.|.....|::.|:.|.|:|||..|||:||.|:|||:.|:||.|||||::|:...
Zfish   223 QYDLIGQTVSSETVKSITGEYVVMTVYFHLKRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPA 287

  Fly   347 RVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFT-------- 403
            |....:|:|||::|:|:.:|..||||.||||:|||:.:.|.:..:.|:|||.|:|||        
Zfish   288 RTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNAQAERAK 352

  Fly   404 ------------KLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFAD-------EDS 449
                        |..:|::...|:      :....||..|.:.....::..|.|:       |.|
Zfish   353 RKQAKAAAAASVKSSTGKNKDTEE------VLQQNSDTNGNLRKRVNSNIQPQAESKKTQRTEAS 411

  Fly   450 SNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSY 514
            |....:.......|:|..:..|....:....|. ....|..|:.|.:....:.....|    || 
Zfish   412 SKSGASSSKPTLTSQSSSTSEGTSSFSSQSRLS-PSSASQSNAAASSSSASKTTPPAP----PS- 470

  Fly   515 ILPNTMERTTQ-TEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRV 578
             .|...::.:. |.|...:.||.: :..|.:|..:|:.:..........|||       |.||..
Zfish   471 -TPTVPDKPSPGTTPAGSAPLHHL-LGPKLENIKKKEAKAQPQPAAPATGGA-------SKIDEY 526

  Fly   579 ARIAFPMSFAFLNLLYWWAY 598
            |||.||:||...|::||..|
Zfish   527 ARILFPVSFGAFNMVYWVVY 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 191/535 (36%)
Neur_chan_LBD 111..315 CDD:280998 96/205 (47%)
Neur_chan_memb 322..>403 CDD:280999 39/80 (49%)
gabra4NP_001017822.1 Neur_chan_LBD 49..256 CDD:280998 96/207 (46%)
Neur_chan_memb 263..543 CDD:280999 84/300 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3005
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 368 1.000 Inparanoid score I2100
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 1 1.000 - - FOG0000415
OrthoInspector 1 1.000 - - otm24219
orthoMCL 1 0.900 - - OOG6_105663
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.870

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