DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and GluClalpha

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:535 Identity:147/535 - (27%)
Similarity:250/535 - (46%) Gaps:102/535 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 SYSSSEISNQRRV--RRKAAADMLSRNISMILENLL--KRYEQSQLPT--HGQGVPTVVQTNILI 141
            |..|:.::|..::  |.|.         ..:|:.:|  .:|:....|:  :|...|.||:.||.:
  Fly    15 SLCSASLANNAKINFREKE---------KKVLDQILGAGKYDARIRPSGINGTDGPAVVRVNIFV 70

  Fly   142 RSMGPVSELDMDYSMDCYFRQYWRDKRLSF---KGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQI 203
            ||:..:.::.|:||:...||:.|.|:||.|   :|.:|.|:|:  ..:::|.||.:|.|.|....
  Fly    71 RSISKIDDVTMEYSVQLTFREQWTDERLKFDDIQGRLKYLTLT--EANRVWMPDLFFSNEKEGHF 133

  Fly   204 HMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQ 268
            |.|.:||..:|:..||.:|||:|:::...|||.|:.:|:|||.|.|.:.|||:....|::.|| :
  Fly   134 HNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWK-E 197

  Fly   269 DDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLS 333
            .|.|..|..:.|.:|.|...:.....:....|::|.|.|....||...|:|||:|:||.::|::|
  Fly   198 GDPVQVVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVS 262

  Fly   334 WVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAG 398
            |||||:.:.|...||||.||::||::|.:......||.|.|..|:|.:..:...:....|||||.
  Fly   263 WVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFAL 327

  Fly   399 VHYFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGAS 463
            |:|.::.||.::...::..:                 ....|.:..:.:.:|:..:.|.|...|.
  Fly   328 VNYASRSGSNKANMHKENMK-----------------KKRRDLEQASLDAASDLLDTDSNATFAM 375

  Fly   464 ESVESKSG----VCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTT 524
            .|..::.|    ..|.:..|.|.||               ||                  ::...
  Fly   376 ASQFARGGGQQKPLVRHPGDPLALE---------------KR------------------LQCEV 407

  Fly   525 QTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSFAF 589
            ..:.|......:.|:     :.|..:.:|                     ||.::||.||:.||.
  Fly   408 HMQAPKRPNCCKTWL-----SKFPTRSKR---------------------IDVISRITFPLVFAL 446

  Fly   590 LNLLYWWAYGMYKKE 604
            .||:||..| ::::|
  Fly   447 FNLVYWSTY-LFREE 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 142/518 (27%)
Neur_chan_LBD 111..315 CDD:280998 71/210 (34%)
Neur_chan_memb 322..>403 CDD:280999 33/80 (41%)
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 145/527 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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